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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634884_s_at:

>probe:Drosophila_2:1634884_s_at:544:677; Interrogation_Position=1234; Antisense; TAGTCCTCCGACATGCGTGACGTAA
>probe:Drosophila_2:1634884_s_at:335:213; Interrogation_Position=1304; Antisense; AAGAGCGTGCAATTGTTTGTCCCTT
>probe:Drosophila_2:1634884_s_at:66:363; Interrogation_Position=1312; Antisense; GCAATTGTTTGTCCCTTTCGACTGC
>probe:Drosophila_2:1634884_s_at:447:687; Interrogation_Position=1327; Antisense; TTTCGACTGCCTGTGTAATTACCAA
>probe:Drosophila_2:1634884_s_at:647:491; Interrogation_Position=1341; Antisense; GTAATTACCAATTGCAATTTGCCTT
>probe:Drosophila_2:1634884_s_at:83:315; Interrogation_Position=1361; Antisense; GCCTTTTAATTTGAGTTTTGCATGC
>probe:Drosophila_2:1634884_s_at:94:477; Interrogation_Position=1375; Antisense; GTTTTGCATGCAACAGGGCGCGTGT
>probe:Drosophila_2:1634884_s_at:634:523; Interrogation_Position=1390; Antisense; GGGCGCGTGTTATTCCCACAAAAAT
>probe:Drosophila_2:1634884_s_at:333:133; Interrogation_Position=1452; Antisense; ACCCACACTTGCAGAGGCACGTAAA
>probe:Drosophila_2:1634884_s_at:126:181; Interrogation_Position=1527; Antisense; AAACAATCTGCGACTGGCTTTTCTC
>probe:Drosophila_2:1634884_s_at:277:403; Interrogation_Position=1538; Antisense; GACTGGCTTTTCTCGATTTTCCCTC
>probe:Drosophila_2:1634884_s_at:202:643; Interrogation_Position=1575; Antisense; TCTCTTTTGCTTCTCTGGCAATGCA
>probe:Drosophila_2:1634884_s_at:659:525; Interrogation_Position=1675; Antisense; GGGAAGCGCACGTTTGAAGCACAAA
>probe:Drosophila_2:1634884_s_at:370:257; Interrogation_Position=1739; Antisense; CAAATCGTGTTGGTGTGTGTAAATA

Paste this into a BLAST search page for me
TAGTCCTCCGACATGCGTGACGTAAAAGAGCGTGCAATTGTTTGTCCCTTGCAATTGTTTGTCCCTTTCGACTGCTTTCGACTGCCTGTGTAATTACCAAGTAATTACCAATTGCAATTTGCCTTGCCTTTTAATTTGAGTTTTGCATGCGTTTTGCATGCAACAGGGCGCGTGTGGGCGCGTGTTATTCCCACAAAAATACCCACACTTGCAGAGGCACGTAAAAAACAATCTGCGACTGGCTTTTCTCGACTGGCTTTTCTCGATTTTCCCTCTCTCTTTTGCTTCTCTGGCAATGCAGGGAAGCGCACGTTTGAAGCACAAACAAATCGTGTTGGTGTGTGTAAATA

Full Affymetrix probeset data:

Annotations for 1634884_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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