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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635005_a_at:

>probe:Drosophila_2:1635005_a_at:191:549; Interrogation_Position=1994; Antisense; GGAGGCAGCGGTTCCAGCCCATCTT
>probe:Drosophila_2:1635005_a_at:710:319; Interrogation_Position=2010; Antisense; GCCCATCTTCTGCATCCGGGAAAAG
>probe:Drosophila_2:1635005_a_at:169:653; Interrogation_Position=2047; Antisense; TCAACAAGCTGCTGGGCATCACGCC
>probe:Drosophila_2:1635005_a_at:270:397; Interrogation_Position=2082; Antisense; GACAAGTACTCACGCATCGTGTTCC
>probe:Drosophila_2:1635005_a_at:577:717; Interrogation_Position=2115; Antisense; TTCGTGTGCTTCAACCTGATGTACT
>probe:Drosophila_2:1635005_a_at:160:489; Interrogation_Position=2135; Antisense; GTACTGGATCATTTACCTGCATGTC
>probe:Drosophila_2:1635005_a_at:475:707; Interrogation_Position=2147; Antisense; TTACCTGCATGTCAGCGACGTGGTC
>probe:Drosophila_2:1635005_a_at:15:141; Interrogation_Position=2164; Antisense; ACGTGGTCGCCGATGATCTGGTGCT
>probe:Drosophila_2:1635005_a_at:394:83; Interrogation_Position=2203; Antisense; AGGGCGTCGTCCACAAGCGGCGCAA
>probe:Drosophila_2:1635005_a_at:504:291; Interrogation_Position=2239; Antisense; CGTGGCCCAAGGACACAGGAGTGAA
>probe:Drosophila_2:1635005_a_at:387:187; Interrogation_Position=2262; Antisense; AACAGCGCGCGAGAGAGTCAAACTT
>probe:Drosophila_2:1635005_a_at:316:101; Interrogation_Position=2275; Antisense; AGAGTCAAACTTGGCAGGGCGCTGA
>probe:Drosophila_2:1635005_a_at:454:569; Interrogation_Position=2287; Antisense; GGCAGGGCGCTGAAAAACCACACAA
>probe:Drosophila_2:1635005_a_at:536:247; Interrogation_Position=2457; Antisense; AATTGCGGGAAGGACACACACACAC

Paste this into a BLAST search page for me
GGAGGCAGCGGTTCCAGCCCATCTTGCCCATCTTCTGCATCCGGGAAAAGTCAACAAGCTGCTGGGCATCACGCCGACAAGTACTCACGCATCGTGTTCCTTCGTGTGCTTCAACCTGATGTACTGTACTGGATCATTTACCTGCATGTCTTACCTGCATGTCAGCGACGTGGTCACGTGGTCGCCGATGATCTGGTGCTAGGGCGTCGTCCACAAGCGGCGCAACGTGGCCCAAGGACACAGGAGTGAAAACAGCGCGCGAGAGAGTCAAACTTAGAGTCAAACTTGGCAGGGCGCTGAGGCAGGGCGCTGAAAAACCACACAAAATTGCGGGAAGGACACACACACAC

Full Affymetrix probeset data:

Annotations for 1635005_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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