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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635114_a_at:

>probe:Drosophila_2:1635114_a_at:715:477; Interrogation_Position=4560; Antisense; GTTTTTGACCAAATCGCATCTCTCT
>probe:Drosophila_2:1635114_a_at:21:45; Interrogation_Position=4572; Antisense; ATCGCATCTCTCTGTGTAGAACCTA
>probe:Drosophila_2:1635114_a_at:328:485; Interrogation_Position=4587; Antisense; GTAGAACCTACTCCGCAATGTGATT
>probe:Drosophila_2:1635114_a_at:473:361; Interrogation_Position=4601; Antisense; GCAATGTGATTGACCCTGGGCCGCG
>probe:Drosophila_2:1635114_a_at:6:319; Interrogation_Position=4620; Antisense; GCCGCGTAGGACCATCATCTAGGTT
>probe:Drosophila_2:1635114_a_at:717:657; Interrogation_Position=4644; Antisense; TAAGTAGATGCGCTTGTCGGCCACT
>probe:Drosophila_2:1635114_a_at:205:267; Interrogation_Position=4671; Antisense; CAGTTTCCCAGCCAGTTGTGATTAA
>probe:Drosophila_2:1635114_a_at:481:655; Interrogation_Position=4719; Antisense; TAATCATCCTCCTAGTCGTAAGTAG
>probe:Drosophila_2:1635114_a_at:679:119; Interrogation_Position=4742; Antisense; AGCTGCATTAGCGTTTGTTTTCTTG
>probe:Drosophila_2:1635114_a_at:444:477; Interrogation_Position=4758; Antisense; GTTTTCTTGTTGTTGTGCCGCCGCA
>probe:Drosophila_2:1635114_a_at:429:483; Interrogation_Position=4791; Antisense; GTATCTGCGGTGTATCTACAGTGTA
>probe:Drosophila_2:1635114_a_at:235:381; Interrogation_Position=4852; Antisense; GAACCTAGCATCAGCCAAGATCCAA
>probe:Drosophila_2:1635114_a_at:372:635; Interrogation_Position=4938; Antisense; TCGCCGACTAGCCTTGAATCATGTA
>probe:Drosophila_2:1635114_a_at:84:723; Interrogation_Position=5036; Antisense; TTGTAATCCCAATCGACTTCGAGCC

Paste this into a BLAST search page for me
GTTTTTGACCAAATCGCATCTCTCTATCGCATCTCTCTGTGTAGAACCTAGTAGAACCTACTCCGCAATGTGATTGCAATGTGATTGACCCTGGGCCGCGGCCGCGTAGGACCATCATCTAGGTTTAAGTAGATGCGCTTGTCGGCCACTCAGTTTCCCAGCCAGTTGTGATTAATAATCATCCTCCTAGTCGTAAGTAGAGCTGCATTAGCGTTTGTTTTCTTGGTTTTCTTGTTGTTGTGCCGCCGCAGTATCTGCGGTGTATCTACAGTGTAGAACCTAGCATCAGCCAAGATCCAATCGCCGACTAGCCTTGAATCATGTATTGTAATCCCAATCGACTTCGAGCC

Full Affymetrix probeset data:

Annotations for 1635114_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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