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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635156_s_at:

>probe:Drosophila_2:1635156_s_at:235:179; Interrogation_Position=3033; Antisense; AAAAACGCAGCCAACAAGAACATTT
>probe:Drosophila_2:1635156_s_at:678:171; Interrogation_Position=3074; Antisense; AAAGCTTATATCTGCTCGATAGATC
>probe:Drosophila_2:1635156_s_at:390:453; Interrogation_Position=3095; Antisense; GATCATGAAACATTATCTACAGCTG
>probe:Drosophila_2:1635156_s_at:419:37; Interrogation_Position=3109; Antisense; ATCTACAGCTGTTGCTACATCACAC
>probe:Drosophila_2:1635156_s_at:629:603; Interrogation_Position=3118; Antisense; TGTTGCTACATCACACGCGCACACA
>probe:Drosophila_2:1635156_s_at:407:261; Interrogation_Position=3149; Antisense; CACCTCCTCTCAAACATGAAGTCAT
>probe:Drosophila_2:1635156_s_at:554:621; Interrogation_Position=3184; Antisense; TGCGATTTTGAAATGCACACATACT
>probe:Drosophila_2:1635156_s_at:79:693; Interrogation_Position=3225; Antisense; TTTGACATTTTTACAGACCAGAAGC
>probe:Drosophila_2:1635156_s_at:285:23; Interrogation_Position=3261; Antisense; ATATCTGTGCTAATATTTCAGCTAT
>probe:Drosophila_2:1635156_s_at:730:695; Interrogation_Position=3276; Antisense; TTTCAGCTATGAGACACTGTTAGAA
>probe:Drosophila_2:1635156_s_at:201:223; Interrogation_Position=3324; Antisense; AAGGTTGAGCCTATGTAGAACATTT
>probe:Drosophila_2:1635156_s_at:680:301; Interrogation_Position=3378; Antisense; GCCCATTTGGGCGTAGATGGAACCC
>probe:Drosophila_2:1635156_s_at:607:357; Interrogation_Position=3431; Antisense; GCAAAATCGTTTTGAGGTCACGGAA
>probe:Drosophila_2:1635156_s_at:87:239; Interrogation_Position=3457; Antisense; AATCAACTTTAAGCCGACGTGCAGG

Paste this into a BLAST search page for me
AAAAACGCAGCCAACAAGAACATTTAAAGCTTATATCTGCTCGATAGATCGATCATGAAACATTATCTACAGCTGATCTACAGCTGTTGCTACATCACACTGTTGCTACATCACACGCGCACACACACCTCCTCTCAAACATGAAGTCATTGCGATTTTGAAATGCACACATACTTTTGACATTTTTACAGACCAGAAGCATATCTGTGCTAATATTTCAGCTATTTTCAGCTATGAGACACTGTTAGAAAAGGTTGAGCCTATGTAGAACATTTGCCCATTTGGGCGTAGATGGAACCCGCAAAATCGTTTTGAGGTCACGGAAAATCAACTTTAAGCCGACGTGCAGG

Full Affymetrix probeset data:

Annotations for 1635156_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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