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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635253_a_at:

>probe:Drosophila_2:1635253_a_at:660:629; Interrogation_Position=1236; Antisense; TCCTTCAAGGAGCTGTGCATCGAGC
>probe:Drosophila_2:1635253_a_at:396:333; Interrogation_Position=1259; Antisense; GCTGGGTCTGATTACCACCGATGAA
>probe:Drosophila_2:1635253_a_at:348:69; Interrogation_Position=1288; Antisense; AGGCCATCGATCTGAAGGTACGCAA
>probe:Drosophila_2:1635253_a_at:148:223; Interrogation_Position=1311; Antisense; AAGGAGGTCGACGAGGCCACCGCCT
>probe:Drosophila_2:1635253_a_at:616:497; Interrogation_Position=1362; Antisense; GTGAGCCACCTCTGGACGGACGTGT
>probe:Drosophila_2:1635253_a_at:490:407; Interrogation_Position=1376; Antisense; GACGGACGTGTACTCCAACAATCTG
>probe:Drosophila_2:1635253_a_at:96:567; Interrogation_Position=1416; Antisense; GGCACCATCGCCTACGATATTGATC
>probe:Drosophila_2:1635253_a_at:449:459; Interrogation_Position=1431; Antisense; GATATTGATCACATCCAGGAGCGCA
>probe:Drosophila_2:1635253_a_at:417:123; Interrogation_Position=1450; Antisense; AGCGCAAGGGCGTCAATCACTAAGT
>probe:Drosophila_2:1635253_a_at:190:239; Interrogation_Position=1464; Antisense; AATCACTAAGTCATCGGGCCAACGA
>probe:Drosophila_2:1635253_a_at:62:445; Interrogation_Position=1493; Antisense; GATTCGGGAACTCACAAGAACCTTA
>probe:Drosophila_2:1635253_a_at:500:383; Interrogation_Position=1655; Antisense; GAACGGATCCGAAGAGACCCACAAA
>probe:Drosophila_2:1635253_a_at:219:117; Interrogation_Position=1681; Antisense; AGCTTAGCTAATCGGAGCACTCCAA
>probe:Drosophila_2:1635253_a_at:267:43; Interrogation_Position=1712; Antisense; ATCGTAGCGCACCACATAACTCTGG

Paste this into a BLAST search page for me
TCCTTCAAGGAGCTGTGCATCGAGCGCTGGGTCTGATTACCACCGATGAAAGGCCATCGATCTGAAGGTACGCAAAAGGAGGTCGACGAGGCCACCGCCTGTGAGCCACCTCTGGACGGACGTGTGACGGACGTGTACTCCAACAATCTGGGCACCATCGCCTACGATATTGATCGATATTGATCACATCCAGGAGCGCAAGCGCAAGGGCGTCAATCACTAAGTAATCACTAAGTCATCGGGCCAACGAGATTCGGGAACTCACAAGAACCTTAGAACGGATCCGAAGAGACCCACAAAAGCTTAGCTAATCGGAGCACTCCAAATCGTAGCGCACCACATAACTCTGG

Full Affymetrix probeset data:

Annotations for 1635253_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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