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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635255_at:

>probe:Drosophila_2:1635255_at:177:53; Interrogation_Position=1018; Antisense; ATGCGGCCAAGACTCCTACAAGGTG
>probe:Drosophila_2:1635255_at:120:719; Interrogation_Position=1087; Antisense; TTCCCAACCGCTTGGCGAAGAGGAG
>probe:Drosophila_2:1635255_at:445:121; Interrogation_Position=1199; Antisense; AGCGAGTCCTCGAATGTTTGCCACA
>probe:Drosophila_2:1635255_at:225:231; Interrogation_Position=1211; Antisense; AATGTTTGCCACAGCACTTCTTCAT
>probe:Drosophila_2:1635255_at:711:713; Interrogation_Position=1228; Antisense; TTCTTCATCTGCATCTTCGGGCAGT
>probe:Drosophila_2:1635255_at:521:83; Interrogation_Position=1250; Antisense; AGTGATTTTGCCACCTGTTCCGACG
>probe:Drosophila_2:1635255_at:258:461; Interrogation_Position=1313; Antisense; GATTATCTCAACAAACTGTGGGCCG
>probe:Drosophila_2:1635255_at:225:73; Interrogation_Position=1355; Antisense; AGGAATCCATCGTATGTGCCGCGAA
>probe:Drosophila_2:1635255_at:225:485; Interrogation_Position=1366; Antisense; GTATGTGCCGCGAACGATTCATCCT
>probe:Drosophila_2:1635255_at:139:271; Interrogation_Position=1385; Antisense; CATCCTCCTGGTCCGAAGTGTATGA
>probe:Drosophila_2:1635255_at:150:97; Interrogation_Position=1470; Antisense; AGAGAGCTATTGTTGACCCTTAATA
>probe:Drosophila_2:1635255_at:30:491; Interrogation_Position=1515; Antisense; GTACAGAACGTGTTTTCTCACCTCT
>probe:Drosophila_2:1635255_at:395:713; Interrogation_Position=1529; Antisense; TTCTCACCTCTGCTACCAAGTTTGG
>probe:Drosophila_2:1635255_at:627:251; Interrogation_Position=1545; Antisense; CAAGTTTGGTTCAACGAGCTGCCAC

Paste this into a BLAST search page for me
ATGCGGCCAAGACTCCTACAAGGTGTTCCCAACCGCTTGGCGAAGAGGAGAGCGAGTCCTCGAATGTTTGCCACAAATGTTTGCCACAGCACTTCTTCATTTCTTCATCTGCATCTTCGGGCAGTAGTGATTTTGCCACCTGTTCCGACGGATTATCTCAACAAACTGTGGGCCGAGGAATCCATCGTATGTGCCGCGAAGTATGTGCCGCGAACGATTCATCCTCATCCTCCTGGTCCGAAGTGTATGAAGAGAGCTATTGTTGACCCTTAATAGTACAGAACGTGTTTTCTCACCTCTTTCTCACCTCTGCTACCAAGTTTGGCAAGTTTGGTTCAACGAGCTGCCAC

Full Affymetrix probeset data:

Annotations for 1635255_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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