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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635256_s_at:

>probe:Drosophila_2:1635256_s_at:137:357; Interrogation_Position=1085; Antisense; GCACATCTACTTCGGACTCTTTGGA
>probe:Drosophila_2:1635256_s_at:352:405; Interrogation_Position=1099; Antisense; GACTCTTTGGATTCGTTCTGGCTAT
>probe:Drosophila_2:1635256_s_at:136:717; Interrogation_Position=1114; Antisense; TTCTGGCTATTGCTAGTGCCCTGAT
>probe:Drosophila_2:1635256_s_at:278:261; Interrogation_Position=1195; Antisense; CACCGGCTGGTGTGTTGGCCAATGT
>probe:Drosophila_2:1635256_s_at:281:333; Interrogation_Position=1250; Antisense; GCTGGTTGTCTACCTAGCCACTGAG
>probe:Drosophila_2:1635256_s_at:200:195; Interrogation_Position=1284; Antisense; AAGCGGAAGCCCATTCCCGAGGACA
>probe:Drosophila_2:1635256_s_at:490:73; Interrogation_Position=1303; Antisense; AGGACACGGCTCTGCTGAACTCCAG
>probe:Drosophila_2:1635256_s_at:520:383; Interrogation_Position=1319; Antisense; GAACTCCAGTTCTGTCAACGAGTAA
>probe:Drosophila_2:1635256_s_at:593:319; Interrogation_Position=1357; Antisense; GCCCCAAATCAACTGCAATGCTTAC
>probe:Drosophila_2:1635256_s_at:377:381; Interrogation_Position=1418; Antisense; GAACCTGATCACACGGATGGTGCTT
>probe:Drosophila_2:1635256_s_at:198:131; Interrogation_Position=1502; Antisense; ACCTAACGACTATGTATGACTCTGA
>probe:Drosophila_2:1635256_s_at:166:191; Interrogation_Position=1533; Antisense; AACATACGTATACTTTGGTCACCAG
>probe:Drosophila_2:1635256_s_at:718:507; Interrogation_Position=1560; Antisense; GTGCAATGATTTCAGCGAGTGCTCA
>probe:Drosophila_2:1635256_s_at:366:327; Interrogation_Position=1574; Antisense; GCGAGTGCTCAAATCATAACGTATT

Paste this into a BLAST search page for me
GCACATCTACTTCGGACTCTTTGGAGACTCTTTGGATTCGTTCTGGCTATTTCTGGCTATTGCTAGTGCCCTGATCACCGGCTGGTGTGTTGGCCAATGTGCTGGTTGTCTACCTAGCCACTGAGAAGCGGAAGCCCATTCCCGAGGACAAGGACACGGCTCTGCTGAACTCCAGGAACTCCAGTTCTGTCAACGAGTAAGCCCCAAATCAACTGCAATGCTTACGAACCTGATCACACGGATGGTGCTTACCTAACGACTATGTATGACTCTGAAACATACGTATACTTTGGTCACCAGGTGCAATGATTTCAGCGAGTGCTCAGCGAGTGCTCAAATCATAACGTATT

Full Affymetrix probeset data:

Annotations for 1635256_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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