FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635264_s_at:

>probe:Drosophila_2:1635264_s_at:531:675; Interrogation_Position=7464; Antisense; TAGCGCTCACGAGTTGTGGGATCAA
>probe:Drosophila_2:1635264_s_at:527:33; Interrogation_Position=7484; Antisense; ATCAAGCCGATCGATTGGTGCGCAC
>probe:Drosophila_2:1635264_s_at:301:5; Interrogation_Position=7497; Antisense; ATTGGTGCGCACAGGCAATCATATA
>probe:Drosophila_2:1635264_s_at:233:383; Interrogation_Position=7534; Antisense; GAACTGGATCACGAGAACGGCCCGC
>probe:Drosophila_2:1635264_s_at:686:609; Interrogation_Position=7559; Antisense; TGACGCTGCATAGCACCATGCACGA
>probe:Drosophila_2:1635264_s_at:150:303; Interrogation_Position=7574; Antisense; CCATGCACGAGGTGTTCCGGTACGT
>probe:Drosophila_2:1635264_s_at:454:615; Interrogation_Position=7598; Antisense; TGCAGGCGGGTCTCAAGACGCTCAG
>probe:Drosophila_2:1635264_s_at:104:105; Interrogation_Position=7613; Antisense; AGACGCTCAGGGATGCCGTGTCGCA
>probe:Drosophila_2:1635264_s_at:247:633; Interrogation_Position=7638; Antisense; TCCGACGCATCAGTCGCAGTAGCGA
>probe:Drosophila_2:1635264_s_at:73:351; Interrogation_Position=7653; Antisense; GCAGTAGCGACAGCGGCAATATCAA
>probe:Drosophila_2:1635264_s_at:182:563; Interrogation_Position=7727; Antisense; GGAAGCACCACCAAACGTGTCTAAA
>probe:Drosophila_2:1635264_s_at:554:125; Interrogation_Position=7849; Antisense; ACCAACAACCTTCCAACAGAACGAT
>probe:Drosophila_2:1635264_s_at:141:357; Interrogation_Position=7950; Antisense; GCACACCATTTACTTATTTCCTTAT
>probe:Drosophila_2:1635264_s_at:228:19; Interrogation_Position=7965; Antisense; ATTTCCTTATGCTCAATTTTCGATT

Paste this into a BLAST search page for me
TAGCGCTCACGAGTTGTGGGATCAAATCAAGCCGATCGATTGGTGCGCACATTGGTGCGCACAGGCAATCATATAGAACTGGATCACGAGAACGGCCCGCTGACGCTGCATAGCACCATGCACGACCATGCACGAGGTGTTCCGGTACGTTGCAGGCGGGTCTCAAGACGCTCAGAGACGCTCAGGGATGCCGTGTCGCATCCGACGCATCAGTCGCAGTAGCGAGCAGTAGCGACAGCGGCAATATCAAGGAAGCACCACCAAACGTGTCTAAAACCAACAACCTTCCAACAGAACGATGCACACCATTTACTTATTTCCTTATATTTCCTTATGCTCAATTTTCGATT

Full Affymetrix probeset data:

Annotations for 1635264_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720