FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635355_a_at:

>probe:Drosophila_2:1635355_a_at:607:511; Interrogation_Position=1506; Antisense; GTGATCATGAAGTGTCCGCCGCCAG
>probe:Drosophila_2:1635355_a_at:659:629; Interrogation_Position=1538; Antisense; TCCGTCACAGGTCTATCTCAACGTG
>probe:Drosophila_2:1635355_a_at:113:39; Interrogation_Position=1552; Antisense; ATCTCAACGTGATGAACGCCGTCGA
>probe:Drosophila_2:1635355_a_at:586:225; Interrogation_Position=1565; Antisense; GAACGCCGTCGACAATTCGGACGAC
>probe:Drosophila_2:1635355_a_at:474:137; Interrogation_Position=1588; Antisense; ACGAGGAAAGCTTCGATCCGATCGA
>probe:Drosophila_2:1635355_a_at:339:671; Interrogation_Position=1621; Antisense; TACGTCCGCGCGTTAAGGCGATCTC
>probe:Drosophila_2:1635355_a_at:470:283; Interrogation_Position=1743; Antisense; CTGCCCGCAGATGAGGACGATTTCC
>probe:Drosophila_2:1635355_a_at:151:599; Interrogation_Position=1763; Antisense; TTTCCCCTGGGAGAGCAACTTTGAC
>probe:Drosophila_2:1635355_a_at:194:421; Interrogation_Position=1775; Antisense; GAGCAACTTTGACGAGCTGTTTCCC
>probe:Drosophila_2:1635355_a_at:695:333; Interrogation_Position=1790; Antisense; GCTGTTTCCCAGTTTGATCTGAGTT
>probe:Drosophila_2:1635355_a_at:302:119; Interrogation_Position=1820; Antisense; AGCTGAAAACTTCGTTCTGTCTCTC
>probe:Drosophila_2:1635355_a_at:403:293; Interrogation_Position=1832; Antisense; CGTTCTGTCTCTCTTTTATTGTTAA
>probe:Drosophila_2:1635355_a_at:330:691; Interrogation_Position=1848; Antisense; TATTGTTAAGTTTGGCCGGCCGCCG
>probe:Drosophila_2:1635355_a_at:701:655; Interrogation_Position=1953; Antisense; TAAGTTTAGCTGTAGGTTTCCATTT

Paste this into a BLAST search page for me
GTGATCATGAAGTGTCCGCCGCCAGTCCGTCACAGGTCTATCTCAACGTGATCTCAACGTGATGAACGCCGTCGAGAACGCCGTCGACAATTCGGACGACACGAGGAAAGCTTCGATCCGATCGATACGTCCGCGCGTTAAGGCGATCTCCTGCCCGCAGATGAGGACGATTTCCTTTCCCCTGGGAGAGCAACTTTGACGAGCAACTTTGACGAGCTGTTTCCCGCTGTTTCCCAGTTTGATCTGAGTTAGCTGAAAACTTCGTTCTGTCTCTCCGTTCTGTCTCTCTTTTATTGTTAATATTGTTAAGTTTGGCCGGCCGCCGTAAGTTTAGCTGTAGGTTTCCATTT

Full Affymetrix probeset data:

Annotations for 1635355_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720