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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635409_at:

>probe:Drosophila_2:1635409_at:265:37; Interrogation_Position=1066; Antisense; ATCATCGAGATCATCCGCGACGCGG
>probe:Drosophila_2:1635409_at:418:521; Interrogation_Position=1090; Antisense; GTGGCCATTGAGCAGGAGTTCCTTA
>probe:Drosophila_2:1635409_at:708:49; Interrogation_Position=1118; Antisense; ATGCCCTGCCCGTCAATTTGATTGG
>probe:Drosophila_2:1635409_at:576:615; Interrogation_Position=1145; Antisense; TGAATTGCGACCTGATGTCCCAGTA
>probe:Drosophila_2:1635409_at:12:3; Interrogation_Position=1171; Antisense; ATTGAGTTCGTAGCGGACCGTTTGC
>probe:Drosophila_2:1635409_at:160:175; Interrogation_Position=1233; Antisense; AAACCCCTTTAACTTCATGGAGATG
>probe:Drosophila_2:1635409_at:389:473; Interrogation_Position=1347; Antisense; GTTCACCCTGGACGCGGATTTCTAG
>probe:Drosophila_2:1635409_at:338:319; Interrogation_Position=1377; Antisense; GCCCCGGACATCATTGTTGCAATTT
>probe:Drosophila_2:1635409_at:682:695; Interrogation_Position=1399; Antisense; TTTAAACCTCTCAAGGGCTGGCTTC
>probe:Drosophila_2:1635409_at:232:333; Interrogation_Position=1415; Antisense; GCTGGCTTCTCATCCTTTATATTTT
>probe:Drosophila_2:1635409_at:36:187; Interrogation_Position=1490; Antisense; AACAATCACAGACCTTCAACACATT
>probe:Drosophila_2:1635409_at:664:257; Interrogation_Position=1515; Antisense; CACCTAATCATTTACTTGGACCTCC
>probe:Drosophila_2:1635409_at:220:665; Interrogation_Position=1561; Antisense; TACACACTTGACTTTTACGAGGAGC
>probe:Drosophila_2:1635409_at:185:671; Interrogation_Position=1576; Antisense; TACGAGGAGCGTACCTTTTCCGAAT

Paste this into a BLAST search page for me
ATCATCGAGATCATCCGCGACGCGGGTGGCCATTGAGCAGGAGTTCCTTAATGCCCTGCCCGTCAATTTGATTGGTGAATTGCGACCTGATGTCCCAGTAATTGAGTTCGTAGCGGACCGTTTGCAAACCCCTTTAACTTCATGGAGATGGTTCACCCTGGACGCGGATTTCTAGGCCCCGGACATCATTGTTGCAATTTTTTAAACCTCTCAAGGGCTGGCTTCGCTGGCTTCTCATCCTTTATATTTTAACAATCACAGACCTTCAACACATTCACCTAATCATTTACTTGGACCTCCTACACACTTGACTTTTACGAGGAGCTACGAGGAGCGTACCTTTTCCGAAT

Full Affymetrix probeset data:

Annotations for 1635409_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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