FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635430_a_at:

>probe:Drosophila_2:1635430_a_at:660:177; Interrogation_Position=3197; Antisense; AAACTTTGACTCTCATGCTTTCTGG
>probe:Drosophila_2:1635430_a_at:10:553; Interrogation_Position=3236; Antisense; GGAGCAGCACAACTTTAACAGCCGT
>probe:Drosophila_2:1635430_a_at:146:697; Interrogation_Position=3273; Antisense; TTTCGGCAGATCGACAACCATCACT
>probe:Drosophila_2:1635430_a_at:134:673; Interrogation_Position=3297; Antisense; TACCTGTGCCTGGAGTGCTACAAAC
>probe:Drosophila_2:1635430_a_at:123:117; Interrogation_Position=3358; Antisense; AGCTACAGTCGCATAAGTTCCGCCA
>probe:Drosophila_2:1635430_a_at:104:627; Interrogation_Position=3385; Antisense; TGCCCCATAGATCCTTCAAGTGCTT
>probe:Drosophila_2:1635430_a_at:291:253; Interrogation_Position=3449; Antisense; CAAGCATTTGAACCGCGACACTAAC
>probe:Drosophila_2:1635430_a_at:726:659; Interrogation_Position=3470; Antisense; TAACCGGTGTGACAATCGTCCGCAC
>probe:Drosophila_2:1635430_a_at:299:633; Interrogation_Position=3488; Antisense; TCCGCACCGGGAATTCGATGACGAT
>probe:Drosophila_2:1635430_a_at:651:379; Interrogation_Position=3513; Antisense; GAACCCGACCAGGATACGCTATTGA
>probe:Drosophila_2:1635430_a_at:295:133; Interrogation_Position=3528; Antisense; ACGCTATTGAGCACCATTTACCATC
>probe:Drosophila_2:1635430_a_at:510:17; Interrogation_Position=3543; Antisense; ATTTACCATCTAACGTGTCCGCAAT
>probe:Drosophila_2:1635430_a_at:493:503; Interrogation_Position=3559; Antisense; GTCCGCAATGCGGTGACAATTTCAA
>probe:Drosophila_2:1635430_a_at:473:365; Interrogation_Position=3600; Antisense; GAATGGCGGGAGCACATCAACGACC

Paste this into a BLAST search page for me
AAACTTTGACTCTCATGCTTTCTGGGGAGCAGCACAACTTTAACAGCCGTTTTCGGCAGATCGACAACCATCACTTACCTGTGCCTGGAGTGCTACAAACAGCTACAGTCGCATAAGTTCCGCCATGCCCCATAGATCCTTCAAGTGCTTCAAGCATTTGAACCGCGACACTAACTAACCGGTGTGACAATCGTCCGCACTCCGCACCGGGAATTCGATGACGATGAACCCGACCAGGATACGCTATTGAACGCTATTGAGCACCATTTACCATCATTTACCATCTAACGTGTCCGCAATGTCCGCAATGCGGTGACAATTTCAAGAATGGCGGGAGCACATCAACGACC

Full Affymetrix probeset data:

Annotations for 1635430_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720