Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635454_a_at:

>probe:Drosophila_2:1635454_a_at:347:105; Interrogation_Position=1510; Antisense; AGACTGAGCGCAAACTTCCCGAAAA
>probe:Drosophila_2:1635454_a_at:579:337; Interrogation_Position=1539; Antisense; GCTCCCATTCCCGAGAACTTTGAAG
>probe:Drosophila_2:1635454_a_at:342:499; Interrogation_Position=1590; Antisense; GTCGATGTAGACAACGCCGCCGAAG
>probe:Drosophila_2:1635454_a_at:190:237; Interrogation_Position=1638; Antisense; AATCGTTACGCCAACGCAGTAAATG
>probe:Drosophila_2:1635454_a_at:449:151; Interrogation_Position=1680; Antisense; AATGTAGGCGTAGCTCCCAAACCCA
>probe:Drosophila_2:1635454_a_at:185:175; Interrogation_Position=1698; Antisense; AAACCCATCGAGGATTCGGGCGCTC
>probe:Drosophila_2:1635454_a_at:322:289; Interrogation_Position=1714; Antisense; CGGGCGCTCACGAAGTTAAGGATGC
>probe:Drosophila_2:1635454_a_at:611:133; Interrogation_Position=1744; Antisense; ACGAGCCTAGCTTTAATTTGCCCGC
>probe:Drosophila_2:1635454_a_at:153:533; Interrogation_Position=1773; Antisense; GGTGGCGGCCAGAATTTCTTCGATG
>probe:Drosophila_2:1635454_a_at:80:717; Interrogation_Position=1791; Antisense; TTCGATGGCGAATTGCCGGCACCTG
>probe:Drosophila_2:1635454_a_at:690:389; Interrogation_Position=1922; Antisense; GAAACAGCCACAGCATTTGCTCGAT
>probe:Drosophila_2:1635454_a_at:482:197; Interrogation_Position=1962; Antisense; AACGAAATCGTTGCTGACCAGGGTA
>probe:Drosophila_2:1635454_a_at:468:609; Interrogation_Position=1976; Antisense; TGACCAGGGTAAGGAGTTCGCCGAA
>probe:Drosophila_2:1635454_a_at:59:227; Interrogation_Position=1999; Antisense; AAGGCATCCACCTGGAAGACGGCAT

Paste this into a BLAST search page for me
AGACTGAGCGCAAACTTCCCGAAAAGCTCCCATTCCCGAGAACTTTGAAGGTCGATGTAGACAACGCCGCCGAAGAATCGTTACGCCAACGCAGTAAATGAATGTAGGCGTAGCTCCCAAACCCAAAACCCATCGAGGATTCGGGCGCTCCGGGCGCTCACGAAGTTAAGGATGCACGAGCCTAGCTTTAATTTGCCCGCGGTGGCGGCCAGAATTTCTTCGATGTTCGATGGCGAATTGCCGGCACCTGGAAACAGCCACAGCATTTGCTCGATAACGAAATCGTTGCTGACCAGGGTATGACCAGGGTAAGGAGTTCGCCGAAAAGGCATCCACCTGGAAGACGGCAT

Full Affymetrix probeset data:

Annotations for 1635454_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime