FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635467_a_at:

>probe:Drosophila_2:1635467_a_at:265:361; Interrogation_Position=2228; Antisense; GCAAGCTGGGCTACTCGGCGAACGC
>probe:Drosophila_2:1635467_a_at:96:233; Interrogation_Position=2264; Antisense; AATGCATTCGCGTGATGCCCAATAA
>probe:Drosophila_2:1635467_a_at:688:9; Interrogation_Position=2294; Antisense; ATTCTTCCGGTAGACCAAGTGCTCT
>probe:Drosophila_2:1635467_a_at:722:85; Interrogation_Position=2311; Antisense; AGTGCTCTCAAAATCATCACCTTCA
>probe:Drosophila_2:1635467_a_at:327:37; Interrogation_Position=2323; Antisense; ATCATCACCTTCATGCTGATTGGCT
>probe:Drosophila_2:1635467_a_at:494:603; Interrogation_Position=2339; Antisense; TGATTGGCTCCGCTTTCCTTATCAC
>probe:Drosophila_2:1635467_a_at:447:629; Interrogation_Position=2354; Antisense; TCCTTATCACCAGTGCGGCCATAAA
>probe:Drosophila_2:1635467_a_at:387:173; Interrogation_Position=2376; Antisense; AAAGCAGGCCTACTACTAGAACCAA
>probe:Drosophila_2:1635467_a_at:149:167; Interrogation_Position=2411; Antisense; AAATCCTTTCACCTGCGTGTTTGGG
>probe:Drosophila_2:1635467_a_at:225:93; Interrogation_Position=2528; Antisense; AGTTACTGGCATGGATGCAGGTCCA
>probe:Drosophila_2:1635467_a_at:436:53; Interrogation_Position=2542; Antisense; ATGCAGGTCCATGCGCAACGTGAAT
>probe:Drosophila_2:1635467_a_at:238:639; Interrogation_Position=2633; Antisense; TCGGAACGGAACGACTCTCGCTTAT
>probe:Drosophila_2:1635467_a_at:185:405; Interrogation_Position=2645; Antisense; GACTCTCGCTTATCTAATACGGCTA
>probe:Drosophila_2:1635467_a_at:190:475; Interrogation_Position=2702; Antisense; GTTAAACCGCTTGTTGCTAGGCTAA

Paste this into a BLAST search page for me
GCAAGCTGGGCTACTCGGCGAACGCAATGCATTCGCGTGATGCCCAATAAATTCTTCCGGTAGACCAAGTGCTCTAGTGCTCTCAAAATCATCACCTTCAATCATCACCTTCATGCTGATTGGCTTGATTGGCTCCGCTTTCCTTATCACTCCTTATCACCAGTGCGGCCATAAAAAAGCAGGCCTACTACTAGAACCAAAAATCCTTTCACCTGCGTGTTTGGGAGTTACTGGCATGGATGCAGGTCCAATGCAGGTCCATGCGCAACGTGAATTCGGAACGGAACGACTCTCGCTTATGACTCTCGCTTATCTAATACGGCTAGTTAAACCGCTTGTTGCTAGGCTAA

Full Affymetrix probeset data:

Annotations for 1635467_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720