FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635481_a_at:

>probe:Drosophila_2:1635481_a_at:33:51; Interrogation_Position=2809; Antisense; ATGCTGGAATCGTGTTGTGTTGTAC
>probe:Drosophila_2:1635481_a_at:316:725; Interrogation_Position=2823; Antisense; TTGTGTTGTACGTAGCTGTGTGAGC
>probe:Drosophila_2:1635481_a_at:490:285; Interrogation_Position=2838; Antisense; CTGTGTGAGCTGTGTGACTAGGATT
>probe:Drosophila_2:1635481_a_at:174:603; Interrogation_Position=2889; Antisense; TGATTACGTTTAGTATTGCCCCAAC
>probe:Drosophila_2:1635481_a_at:216:449; Interrogation_Position=2955; Antisense; GATCCCGCGTAGTAGCTGATTTGAT
>probe:Drosophila_2:1635481_a_at:635:1; Interrogation_Position=2987; Antisense; ATTGGCGATTAGAAGGAGGCCCCTT
>probe:Drosophila_2:1635481_a_at:13:321; Interrogation_Position=3005; Antisense; GCCCCTTCCGCTAGATAGTAAACTG
>probe:Drosophila_2:1635481_a_at:33:491; Interrogation_Position=3022; Antisense; GTAAACTGGATGCATTTAGCAGCTT
>probe:Drosophila_2:1635481_a_at:241:707; Interrogation_Position=3037; Antisense; TTAGCAGCTTGACTTGTTTCCGCGC
>probe:Drosophila_2:1635481_a_at:262:255; Interrogation_Position=3071; Antisense; CAAACCTTGTTTGGATCATTCCCCG
>probe:Drosophila_2:1635481_a_at:630:623; Interrogation_Position=3112; Antisense; TGCGCCCTCGCATTCGAATAAGTTA
>probe:Drosophila_2:1635481_a_at:140:613; Interrogation_Position=3130; Antisense; TAAGTTAATCTAGCCGAACGGAGCG
>probe:Drosophila_2:1635481_a_at:82:383; Interrogation_Position=3145; Antisense; GAACGGAGCGACCTTAACTCTAAAT
>probe:Drosophila_2:1635481_a_at:344:587; Interrogation_Position=3262; Antisense; TGGACGATGTGCATCCGGGAGCCAC

Paste this into a BLAST search page for me
ATGCTGGAATCGTGTTGTGTTGTACTTGTGTTGTACGTAGCTGTGTGAGCCTGTGTGAGCTGTGTGACTAGGATTTGATTACGTTTAGTATTGCCCCAACGATCCCGCGTAGTAGCTGATTTGATATTGGCGATTAGAAGGAGGCCCCTTGCCCCTTCCGCTAGATAGTAAACTGGTAAACTGGATGCATTTAGCAGCTTTTAGCAGCTTGACTTGTTTCCGCGCCAAACCTTGTTTGGATCATTCCCCGTGCGCCCTCGCATTCGAATAAGTTATAAGTTAATCTAGCCGAACGGAGCGGAACGGAGCGACCTTAACTCTAAATTGGACGATGTGCATCCGGGAGCCAC

Full Affymetrix probeset data:

Annotations for 1635481_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720