FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635500_a_at:

>probe:Drosophila_2:1635500_a_at:44:303; Interrogation_Position=5849; Antisense; CCCGGTTGCACACTGCTTTACAAAA
>probe:Drosophila_2:1635500_a_at:501:183; Interrogation_Position=5870; Antisense; AAAAGCAGGCGCAGCTCTGACGGAC
>probe:Drosophila_2:1635500_a_at:160:479; Interrogation_Position=5919; Antisense; GTTTAAAAGTCACCCGATCACTAAG
>probe:Drosophila_2:1635500_a_at:213:453; Interrogation_Position=5934; Antisense; GATCACTAAGGTTGCTACTTCCCTT
>probe:Drosophila_2:1635500_a_at:212:665; Interrogation_Position=5949; Antisense; TACTTCCCTTTATCCCACATTTAAG
>probe:Drosophila_2:1635500_a_at:21:125; Interrogation_Position=5972; Antisense; AGCGCTAAGCATATATTCGATGTCT
>probe:Drosophila_2:1635500_a_at:169:669; Interrogation_Position=6084; Antisense; TATTTGTACGAACAGCGGGCGTTAG
>probe:Drosophila_2:1635500_a_at:140:673; Interrogation_Position=6121; Antisense; TACCATCTTATCTCTTACATTACGT
>probe:Drosophila_2:1635500_a_at:400:149; Interrogation_Position=6137; Antisense; ACATTACGTTATGCGAACCTTCGAC
>probe:Drosophila_2:1635500_a_at:182:293; Interrogation_Position=6149; Antisense; GCGAACCTTCGACCAAAGTTAATTG
>probe:Drosophila_2:1635500_a_at:650:643; Interrogation_Position=6209; Antisense; TCAATTCTTTTCCTTTAGTGCCCCA
>probe:Drosophila_2:1635500_a_at:331:301; Interrogation_Position=6230; Antisense; CCCACTTTGAGCACGCATCTTAATT
>probe:Drosophila_2:1635500_a_at:311:159; Interrogation_Position=6294; Antisense; ACACACACACACTAGTCTGTTATTT
>probe:Drosophila_2:1635500_a_at:23:149; Interrogation_Position=6370; Antisense; ACTTTACTTGGCCTTGAGTTGCAAC

Paste this into a BLAST search page for me
CCCGGTTGCACACTGCTTTACAAAAAAAAGCAGGCGCAGCTCTGACGGACGTTTAAAAGTCACCCGATCACTAAGGATCACTAAGGTTGCTACTTCCCTTTACTTCCCTTTATCCCACATTTAAGAGCGCTAAGCATATATTCGATGTCTTATTTGTACGAACAGCGGGCGTTAGTACCATCTTATCTCTTACATTACGTACATTACGTTATGCGAACCTTCGACGCGAACCTTCGACCAAAGTTAATTGTCAATTCTTTTCCTTTAGTGCCCCACCCACTTTGAGCACGCATCTTAATTACACACACACACTAGTCTGTTATTTACTTTACTTGGCCTTGAGTTGCAAC

Full Affymetrix probeset data:

Annotations for 1635500_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720