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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635505_a_at:

>probe:Drosophila_2:1635505_a_at:581:163; Interrogation_Position=1800; Antisense; AAATCTACGGCAGCGCCCAAGAGGA
>probe:Drosophila_2:1635505_a_at:318:379; Interrogation_Position=1840; Antisense; GAAGCGTGGCGAGCGCATCAACATC
>probe:Drosophila_2:1635505_a_at:137:285; Interrogation_Position=1880; Antisense; CTGCAGTTGATTGTTCAGCGGCACT
>probe:Drosophila_2:1635505_a_at:687:711; Interrogation_Position=1893; Antisense; TTCAGCGGCACTTCGAGCGGGAGAA
>probe:Drosophila_2:1635505_a_at:678:431; Interrogation_Position=1987; Antisense; GAGTGCGTATCTGCACCTGGTAAAC
>probe:Drosophila_2:1635505_a_at:653:537; Interrogation_Position=2005; Antisense; GGTAAACCGCCACATCAAGAGCATG
>probe:Drosophila_2:1635505_a_at:40:421; Interrogation_Position=2023; Antisense; GAGCATGTTCCGGATGGGCTTCATC
>probe:Drosophila_2:1635505_a_at:102:129; Interrogation_Position=2058; Antisense; ACCAGATGAACTTACCCAGCGCGGG
>probe:Drosophila_2:1635505_a_at:220:55; Interrogation_Position=2144; Antisense; ATGCAAGGGTGCTTTCTGGTCCTGC
>probe:Drosophila_2:1635505_a_at:422:523; Interrogation_Position=2173; Antisense; GGGCTTCACGTTGGCTCTTTTAATA
>probe:Drosophila_2:1635505_a_at:439:25; Interrogation_Position=2195; Antisense; ATAGTGTGCGGCGAGTTCTGGTATC
>probe:Drosophila_2:1635505_a_at:337:389; Interrogation_Position=2238; Antisense; GAAAACGGCGTCAGTTCACCAACTG
>probe:Drosophila_2:1635505_a_at:137:565; Interrogation_Position=2271; Antisense; GGAATCCTAAGAGCTCTTGCCATGG
>probe:Drosophila_2:1635505_a_at:484:491; Interrogation_Position=2316; Antisense; GTAACTGGCATGTACAACGCTGATG

Paste this into a BLAST search page for me
AAATCTACGGCAGCGCCCAAGAGGAGAAGCGTGGCGAGCGCATCAACATCCTGCAGTTGATTGTTCAGCGGCACTTTCAGCGGCACTTCGAGCGGGAGAAGAGTGCGTATCTGCACCTGGTAAACGGTAAACCGCCACATCAAGAGCATGGAGCATGTTCCGGATGGGCTTCATCACCAGATGAACTTACCCAGCGCGGGATGCAAGGGTGCTTTCTGGTCCTGCGGGCTTCACGTTGGCTCTTTTAATAATAGTGTGCGGCGAGTTCTGGTATCGAAAACGGCGTCAGTTCACCAACTGGGAATCCTAAGAGCTCTTGCCATGGGTAACTGGCATGTACAACGCTGATG

Full Affymetrix probeset data:

Annotations for 1635505_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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