FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635523_a_at:

>probe:Drosophila_2:1635523_a_at:69:725; Interrogation_Position=1276; Antisense; TTGCATAGCTGACTACCGCTGGTAC
>probe:Drosophila_2:1635523_a_at:183:181; Interrogation_Position=1308; Antisense; AAACACACAACGGTCAGCAGCGGGA
>probe:Drosophila_2:1635523_a_at:666:19; Interrogation_Position=1338; Antisense; ATTTGCCCACCGATGCAGCTATAAT
>probe:Drosophila_2:1635523_a_at:230:17; Interrogation_Position=1372; Antisense; ATTTTGCGTGTACTTGGATAGCCAG
>probe:Drosophila_2:1635523_a_at:556:543; Interrogation_Position=1387; Antisense; GGATAGCCAGTTGATGCCGTTGCCG
>probe:Drosophila_2:1635523_a_at:325:145; Interrogation_Position=1434; Antisense; ACTCCCGCTACGTGTTAATTCGCGA
>probe:Drosophila_2:1635523_a_at:488:143; Interrogation_Position=1509; Antisense; ACTGCGCCATTTTAAGTACCGGCAA
>probe:Drosophila_2:1635523_a_at:211:383; Interrogation_Position=1571; Antisense; GAACTACACAACTGCGTCTACGATA
>probe:Drosophila_2:1635523_a_at:95:471; Interrogation_Position=1606; Antisense; GTTCTACGTTATCATACAGTTCCTA
>probe:Drosophila_2:1635523_a_at:212:75; Interrogation_Position=1650; Antisense; AGGACTCTGCTCTGGAGTGCGTAAA
>probe:Drosophila_2:1635523_a_at:60:663; Interrogation_Position=1738; Antisense; TATGACTTTTAATCCCACCCCTAAT
>probe:Drosophila_2:1635523_a_at:138:115; Interrogation_Position=1778; Antisense; AGCATGATCCTTTGTGACTCGACTA
>probe:Drosophila_2:1635523_a_at:467:405; Interrogation_Position=1793; Antisense; GACTCGACTAGCGTTTGGTGACTGG
>probe:Drosophila_2:1635523_a_at:73:397; Interrogation_Position=1817; Antisense; GACAATCCTCATCATTCGTTACTAT

Paste this into a BLAST search page for me
TTGCATAGCTGACTACCGCTGGTACAAACACACAACGGTCAGCAGCGGGAATTTGCCCACCGATGCAGCTATAATATTTTGCGTGTACTTGGATAGCCAGGGATAGCCAGTTGATGCCGTTGCCGACTCCCGCTACGTGTTAATTCGCGAACTGCGCCATTTTAAGTACCGGCAAGAACTACACAACTGCGTCTACGATAGTTCTACGTTATCATACAGTTCCTAAGGACTCTGCTCTGGAGTGCGTAAATATGACTTTTAATCCCACCCCTAATAGCATGATCCTTTGTGACTCGACTAGACTCGACTAGCGTTTGGTGACTGGGACAATCCTCATCATTCGTTACTAT

Full Affymetrix probeset data:

Annotations for 1635523_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720