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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635567_s_at:

>probe:Drosophila_2:1635567_s_at:298:567; Interrogation_Position=3603; Antisense; GGCTCACAAGTGTTAGGAAACCCTT
>probe:Drosophila_2:1635567_s_at:198:677; Interrogation_Position=3616; Antisense; TAGGAAACCCTTAACATGTATTTGT
>probe:Drosophila_2:1635567_s_at:337:683; Interrogation_Position=3649; Antisense; TATATCTAACTGCTGAGTGTGTGGC
>probe:Drosophila_2:1635567_s_at:334:521; Interrogation_Position=3669; Antisense; GTGGCAGTGCTGAGAATGAACGAAC
>probe:Drosophila_2:1635567_s_at:654:381; Interrogation_Position=3686; Antisense; GAACGAACACTTTGCACACTTCAAT
>probe:Drosophila_2:1635567_s_at:557:355; Interrogation_Position=3699; Antisense; GCACACTTCAATTAAACGCTCTAAA
>probe:Drosophila_2:1635567_s_at:396:27; Interrogation_Position=3768; Antisense; ATACGAATGAGTTTAGCTAAGCCTA
>probe:Drosophila_2:1635567_s_at:115:667; Interrogation_Position=3781; Antisense; TAGCTAAGCCTAAGTCCGAAATAAC
>probe:Drosophila_2:1635567_s_at:103:157; Interrogation_Position=3827; Antisense; ACAGCGAAATGCAACCAAACTCCAA
>probe:Drosophila_2:1635567_s_at:80:255; Interrogation_Position=3842; Antisense; CAAACTCCAAGGCTCGATGCGAAAA
>probe:Drosophila_2:1635567_s_at:471:325; Interrogation_Position=3860; Antisense; GCGAAAAAGCGCGAGACAAAACATT
>probe:Drosophila_2:1635567_s_at:599:449; Interrogation_Position=3892; Antisense; GATCGTGAACTACCTTTGTATTTAC
>probe:Drosophila_2:1635567_s_at:62:149; Interrogation_Position=3917; Antisense; ACATTTTTCACTCTATCCTTTTCTT
>probe:Drosophila_2:1635567_s_at:196:165; Interrogation_Position=4037; Antisense; AAATCCCCAAAAACAAGCGCAATGA

Paste this into a BLAST search page for me
GGCTCACAAGTGTTAGGAAACCCTTTAGGAAACCCTTAACATGTATTTGTTATATCTAACTGCTGAGTGTGTGGCGTGGCAGTGCTGAGAATGAACGAACGAACGAACACTTTGCACACTTCAATGCACACTTCAATTAAACGCTCTAAAATACGAATGAGTTTAGCTAAGCCTATAGCTAAGCCTAAGTCCGAAATAACACAGCGAAATGCAACCAAACTCCAACAAACTCCAAGGCTCGATGCGAAAAGCGAAAAAGCGCGAGACAAAACATTGATCGTGAACTACCTTTGTATTTACACATTTTTCACTCTATCCTTTTCTTAAATCCCCAAAAACAAGCGCAATGA

Full Affymetrix probeset data:

Annotations for 1635567_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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