FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635630_a_at:

>probe:Drosophila_2:1635630_a_at:43:345; Interrogation_Position=4303; Antisense; GCATTCGTTTCAGCACGAGCGACGT
>probe:Drosophila_2:1635630_a_at:478:355; Interrogation_Position=4315; Antisense; GCACGAGCGACGTATTGATCATACA
>probe:Drosophila_2:1635630_a_at:628:717; Interrogation_Position=4353; Antisense; TTCGCAATACGATTCCCAGTTCAGA
>probe:Drosophila_2:1635630_a_at:46:597; Interrogation_Position=4419; Antisense; TGTGAAACTTTTGTGCTTGCGCAGA
>probe:Drosophila_2:1635630_a_at:263:273; Interrogation_Position=4434; Antisense; CTTGCGCAGATCTTTGTTTACGTTG
>probe:Drosophila_2:1635630_a_at:263:603; Interrogation_Position=4473; Antisense; TGTTCCCCTATTAACTACAATGTCA
>probe:Drosophila_2:1635630_a_at:171:17; Interrogation_Position=4534; Antisense; ATTTTAGTCGGCGTTGCTATGCAGC
>probe:Drosophila_2:1635630_a_at:330:341; Interrogation_Position=4549; Antisense; GCTATGCAGCCCAAACTATTTAGTT
>probe:Drosophila_2:1635630_a_at:691:675; Interrogation_Position=4582; Antisense; TAGTTTTAATTCTCCCTAAGTGCGT
>probe:Drosophila_2:1635630_a_at:642:711; Interrogation_Position=4591; Antisense; TTCTCCCTAAGTGCGTCTAAGTTGT
>probe:Drosophila_2:1635630_a_at:698:205; Interrogation_Position=4616; Antisense; AAGCGACGTCTATATAATTGTACAA
>probe:Drosophila_2:1635630_a_at:567:605; Interrogation_Position=4646; Antisense; TGATGCAAAGCAAACCCCTAACGAA
>probe:Drosophila_2:1635630_a_at:542:685; Interrogation_Position=4674; Antisense; TATATTACCTAATTGTAGCTGCTAT
>probe:Drosophila_2:1635630_a_at:5:333; Interrogation_Position=4691; Antisense; GCTGCTATTATAGTTTTTCTAACCG

Paste this into a BLAST search page for me
GCATTCGTTTCAGCACGAGCGACGTGCACGAGCGACGTATTGATCATACATTCGCAATACGATTCCCAGTTCAGATGTGAAACTTTTGTGCTTGCGCAGACTTGCGCAGATCTTTGTTTACGTTGTGTTCCCCTATTAACTACAATGTCAATTTTAGTCGGCGTTGCTATGCAGCGCTATGCAGCCCAAACTATTTAGTTTAGTTTTAATTCTCCCTAAGTGCGTTTCTCCCTAAGTGCGTCTAAGTTGTAAGCGACGTCTATATAATTGTACAATGATGCAAAGCAAACCCCTAACGAATATATTACCTAATTGTAGCTGCTATGCTGCTATTATAGTTTTTCTAACCG

Full Affymetrix probeset data:

Annotations for 1635630_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720