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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635666_at:

>probe:Drosophila_2:1635666_at:144:293; Interrogation_Position=13; Antisense; CGATAAGTGAATTGTGTTTGTGAAA
>probe:Drosophila_2:1635666_at:668:207; Interrogation_Position=371; Antisense; AAGCATGCTGTCAGTGAGGGAACCA
>probe:Drosophila_2:1635666_at:59:497; Interrogation_Position=380; Antisense; GTCAGTGAGGGAACCAAGGCTGTCA
>probe:Drosophila_2:1635666_at:650:605; Interrogation_Position=385; Antisense; TGAGGGAACCAAGGCTGTCACCAAG
>probe:Drosophila_2:1635666_at:287:525; Interrogation_Position=388; Antisense; GGGAACCAAGGCTGTCACCAAGTAC
>probe:Drosophila_2:1635666_at:603:377; Interrogation_Position=390; Antisense; GAACCAAGGCTGTCACCAAGTACAC
>probe:Drosophila_2:1635666_at:182:227; Interrogation_Position=395; Antisense; AAGGCTGTCACCAAGTACACCAGCT
>probe:Drosophila_2:1635666_at:106:599; Interrogation_Position=400; Antisense; TGTCACCAAGTACACCAGCTCTAAA
>probe:Drosophila_2:1635666_at:16:491; Interrogation_Position=409; Antisense; GTACACCAGCTCTAAATAATTTTCT
>probe:Drosophila_2:1635666_at:127:119; Interrogation_Position=416; Antisense; AGCTCTAAATAATTTTCTCCTGCGA
>probe:Drosophila_2:1635666_at:191:165; Interrogation_Position=422; Antisense; AAATAATTTTCTCCTGCGAATGCGG
>probe:Drosophila_2:1635666_at:665:653; Interrogation_Position=425; Antisense; TAATTTTCTCCTGCGAATGCGGACA
>probe:Drosophila_2:1635666_at:597:701; Interrogation_Position=428; Antisense; TTTTCTCCTGCGAATGCGGACAATA
>probe:Drosophila_2:1635666_at:151:641; Interrogation_Position=431; Antisense; TCTCCTGCGAATGCGGACAATAATC

Paste this into a BLAST search page for me
CGATAAGTGAATTGTGTTTGTGAAAAAGCATGCTGTCAGTGAGGGAACCAGTCAGTGAGGGAACCAAGGCTGTCATGAGGGAACCAAGGCTGTCACCAAGGGGAACCAAGGCTGTCACCAAGTACGAACCAAGGCTGTCACCAAGTACACAAGGCTGTCACCAAGTACACCAGCTTGTCACCAAGTACACCAGCTCTAAAGTACACCAGCTCTAAATAATTTTCTAGCTCTAAATAATTTTCTCCTGCGAAAATAATTTTCTCCTGCGAATGCGGTAATTTTCTCCTGCGAATGCGGACATTTTCTCCTGCGAATGCGGACAATATCTCCTGCGAATGCGGACAATAATC

Full Affymetrix probeset data:

Annotations for 1635666_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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