Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635702_a_at:

>probe:Drosophila_2:1635702_a_at:473:391; Interrogation_Position=3170; Antisense; GAAACCGAAGAAGCGCCTCTGCTGG
>probe:Drosophila_2:1635702_a_at:573:563; Interrogation_Position=3214; Antisense; TGGAAAAGTTCCAGCTGCCGGATCT
>probe:Drosophila_2:1635702_a_at:13:319; Interrogation_Position=3230; Antisense; GCCGGATCTCCAGTTGCAGAATCAA
>probe:Drosophila_2:1635702_a_at:45:65; Interrogation_Position=3254; Antisense; ATGGAACTACACGTTGACGCCCAAG
>probe:Drosophila_2:1635702_a_at:67:113; Interrogation_Position=3310; Antisense; AGCAAAGTCCACCAGCGGATGCGGT
>probe:Drosophila_2:1635702_a_at:642:199; Interrogation_Position=3383; Antisense; AACGCCCATCAGTGGACAGACGCAG
>probe:Drosophila_2:1635702_a_at:304:453; Interrogation_Position=3440; Antisense; GATCATGTCCGTGCCCAGGGATCAG
>probe:Drosophila_2:1635702_a_at:643:461; Interrogation_Position=3494; Antisense; GATTAGCCAGTTTCTGCAACGCCAG
>probe:Drosophila_2:1635702_a_at:156:215; Interrogation_Position=3543; Antisense; AAGATGCAGGAGAAGCCACCGCCCA
>probe:Drosophila_2:1635702_a_at:375:131; Interrogation_Position=3560; Antisense; ACCGCCCATTGTCTTCGATGATGTG
>probe:Drosophila_2:1635702_a_at:155:445; Interrogation_Position=3576; Antisense; GATGATGTGGTGATGCTCTCGGATT
>probe:Drosophila_2:1635702_a_at:131:703; Interrogation_Position=3676; Antisense; TTTTGTCGCTAGTTTCACTCGTAAG
>probe:Drosophila_2:1635702_a_at:383:167; Interrogation_Position=3714; Antisense; AAATGTTCCGATGTACGTTCGACTT
>probe:Drosophila_2:1635702_a_at:319:139; Interrogation_Position=3728; Antisense; ACGTTCGACTTGTATGTCCTTCTCA

Paste this into a BLAST search page for me
GAAACCGAAGAAGCGCCTCTGCTGGTGGAAAAGTTCCAGCTGCCGGATCTGCCGGATCTCCAGTTGCAGAATCAAATGGAACTACACGTTGACGCCCAAGAGCAAAGTCCACCAGCGGATGCGGTAACGCCCATCAGTGGACAGACGCAGGATCATGTCCGTGCCCAGGGATCAGGATTAGCCAGTTTCTGCAACGCCAGAAGATGCAGGAGAAGCCACCGCCCAACCGCCCATTGTCTTCGATGATGTGGATGATGTGGTGATGCTCTCGGATTTTTTGTCGCTAGTTTCACTCGTAAGAAATGTTCCGATGTACGTTCGACTTACGTTCGACTTGTATGTCCTTCTCA

Full Affymetrix probeset data:

Annotations for 1635702_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime