FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635742_s_at:

>probe:Drosophila_2:1635742_s_at:24:79; Interrogation_Position=5935; Antisense; AGGATCTCCGCTCGGCAATTGCGAA
>probe:Drosophila_2:1635742_s_at:82:3; Interrogation_Position=5952; Antisense; ATTGCGAACCGGGACTTCTTTCTGG
>probe:Drosophila_2:1635742_s_at:511:515; Interrogation_Position=6059; Antisense; GTGTAGCACCAATTAGCCTCTAGGA
>probe:Drosophila_2:1635742_s_at:233:539; Interrogation_Position=6137; Antisense; GGTTAGCCTAAGTCGAGTCAGTTCT
>probe:Drosophila_2:1635742_s_at:676:495; Interrogation_Position=6153; Antisense; GTCAGTTCTTTGTGTCATTTGTGCT
>probe:Drosophila_2:1635742_s_at:306:19; Interrogation_Position=6169; Antisense; ATTTGTGCTGAAGTGCTGGTTTCCC
>probe:Drosophila_2:1635742_s_at:385:479; Interrogation_Position=6187; Antisense; GTTTCCCTGGCGAATTTAGCTGGTT
>probe:Drosophila_2:1635742_s_at:69:693; Interrogation_Position=6202; Antisense; TTAGCTGGTTTTCATTTGGCACTTT
>probe:Drosophila_2:1635742_s_at:381:21; Interrogation_Position=6215; Antisense; ATTTGGCACTTTGGCAGGTCTGGAA
>probe:Drosophila_2:1635742_s_at:12:499; Interrogation_Position=6270; Antisense; GTCTATTTGCCTATAACATGCCGAA
>probe:Drosophila_2:1635742_s_at:672:295; Interrogation_Position=6355; Antisense; CGACCAGGAGTCCAAGTCAGGCCAT
>probe:Drosophila_2:1635742_s_at:718:67; Interrogation_Position=6373; Antisense; AGGCCATGTGCGTGTCGACCGAAAA
>probe:Drosophila_2:1635742_s_at:596:229; Interrogation_Position=6396; Antisense; AATGAGTCTCCCGTTTTCAAACAGA
>probe:Drosophila_2:1635742_s_at:121:369; Interrogation_Position=6419; Antisense; GAATGCATATGCTTTCGCTATTAAG

Paste this into a BLAST search page for me
AGGATCTCCGCTCGGCAATTGCGAAATTGCGAACCGGGACTTCTTTCTGGGTGTAGCACCAATTAGCCTCTAGGAGGTTAGCCTAAGTCGAGTCAGTTCTGTCAGTTCTTTGTGTCATTTGTGCTATTTGTGCTGAAGTGCTGGTTTCCCGTTTCCCTGGCGAATTTAGCTGGTTTTAGCTGGTTTTCATTTGGCACTTTATTTGGCACTTTGGCAGGTCTGGAAGTCTATTTGCCTATAACATGCCGAACGACCAGGAGTCCAAGTCAGGCCATAGGCCATGTGCGTGTCGACCGAAAAAATGAGTCTCCCGTTTTCAAACAGAGAATGCATATGCTTTCGCTATTAAG

Full Affymetrix probeset data:

Annotations for 1635742_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720