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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635753_s_at:

>probe:Drosophila_2:1635753_s_at:506:119; Interrogation_Position=1437; Antisense; AGCTGGATTGAGGTTCAGTTTCTGC
>probe:Drosophila_2:1635753_s_at:492:713; Interrogation_Position=1450; Antisense; TTCAGTTTCTGCGTGATGCCGTCGA
>probe:Drosophila_2:1635753_s_at:440:447; Interrogation_Position=1464; Antisense; GATGCCGTCGATGTCTTATGCCAAT
>probe:Drosophila_2:1635753_s_at:192:705; Interrogation_Position=1479; Antisense; TTATGCCAATGTCGAACCACTCTGA
>probe:Drosophila_2:1635753_s_at:34:381; Interrogation_Position=1492; Antisense; GAACCACTCTGATGTACAGCTATGT
>probe:Drosophila_2:1635753_s_at:674:173; Interrogation_Position=1595; Antisense; AAAGCTGTCCGAGTGCTTGGAGCGA
>probe:Drosophila_2:1635753_s_at:317:587; Interrogation_Position=1612; Antisense; TGGAGCGAGAGATCACTGTCAAGAA
>probe:Drosophila_2:1635753_s_at:376:173; Interrogation_Position=1651; Antisense; AACAAAAGGTTCTGGACTTATCGCA
>probe:Drosophila_2:1635753_s_at:295:557; Interrogation_Position=1664; Antisense; GGACTTATCGCACTATTGCCAAAAA
>probe:Drosophila_2:1635753_s_at:516:179; Interrogation_Position=1684; Antisense; AAAAACGACGACATGTCCTCCTTTG
>probe:Drosophila_2:1635753_s_at:62:61; Interrogation_Position=1696; Antisense; ATGTCCTCCTTTGCCATGTGAGGGA
>probe:Drosophila_2:1635753_s_at:266:267; Interrogation_Position=1855; Antisense; CAGTAAATCTTTCGGTTTTCACTCG
>probe:Drosophila_2:1635753_s_at:511:701; Interrogation_Position=1870; Antisense; TTTTCACTCGGGTTGAACTGACTTC
>probe:Drosophila_2:1635753_s_at:341:195; Interrogation_Position=1885; Antisense; AACTGACTTCAGTTCACTGGATAAA

Paste this into a BLAST search page for me
AGCTGGATTGAGGTTCAGTTTCTGCTTCAGTTTCTGCGTGATGCCGTCGAGATGCCGTCGATGTCTTATGCCAATTTATGCCAATGTCGAACCACTCTGAGAACCACTCTGATGTACAGCTATGTAAAGCTGTCCGAGTGCTTGGAGCGATGGAGCGAGAGATCACTGTCAAGAAAACAAAAGGTTCTGGACTTATCGCAGGACTTATCGCACTATTGCCAAAAAAAAAACGACGACATGTCCTCCTTTGATGTCCTCCTTTGCCATGTGAGGGACAGTAAATCTTTCGGTTTTCACTCGTTTTCACTCGGGTTGAACTGACTTCAACTGACTTCAGTTCACTGGATAAA

Full Affymetrix probeset data:

Annotations for 1635753_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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