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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635796_a_at:

>probe:Drosophila_2:1635796_a_at:230:583; Interrogation_Position=1763; Antisense; TGGCGGCCGTTGCACCTGGAATATT
>probe:Drosophila_2:1635796_a_at:452:261; Interrogation_Position=1775; Antisense; CACCTGGAATATTGCACGTTGTTAA
>probe:Drosophila_2:1635796_a_at:524:601; Interrogation_Position=1810; Antisense; TGTATATTCCTGGTTTCGACACGCG
>probe:Drosophila_2:1635796_a_at:3:433; Interrogation_Position=1838; Antisense; GAGTCCTCACAGCTAAACAAGTCTT
>probe:Drosophila_2:1635796_a_at:360:693; Interrogation_Position=1889; Antisense; TTTGTTCAACGTGTGTAGTAGCTTA
>probe:Drosophila_2:1635796_a_at:261:107; Interrogation_Position=1968; Antisense; AGAACAATTCAAACCAGCCGTCCCA
>probe:Drosophila_2:1635796_a_at:708:195; Interrogation_Position=2000; Antisense; AACGTTTAAAAGTACTCGCTGCAGT
>probe:Drosophila_2:1635796_a_at:41:705; Interrogation_Position=2055; Antisense; TTAGAGCGCAACTTGATTCTTCAGC
>probe:Drosophila_2:1635796_a_at:260:13; Interrogation_Position=2070; Antisense; ATTCTTCAGCCCGTGTAAATAGCCG
>probe:Drosophila_2:1635796_a_at:340:675; Interrogation_Position=2146; Antisense; TAGCCGTAGTTAATATAGCCGTACT
>probe:Drosophila_2:1635796_a_at:198:661; Interrogation_Position=2177; Antisense; TAAATGTAACGCACTCTTCGAGCAC
>probe:Drosophila_2:1635796_a_at:488:243; Interrogation_Position=2229; Antisense; AATTTTAACGTATTCACCCGCATCT
>probe:Drosophila_2:1635796_a_at:683:259; Interrogation_Position=2243; Antisense; CACCCGCATCTTTACTTAGTTCAAT
>probe:Drosophila_2:1635796_a_at:449:147; Interrogation_Position=2256; Antisense; ACTTAGTTCAATTTGGCGGCAATTA

Paste this into a BLAST search page for me
TGGCGGCCGTTGCACCTGGAATATTCACCTGGAATATTGCACGTTGTTAATGTATATTCCTGGTTTCGACACGCGGAGTCCTCACAGCTAAACAAGTCTTTTTGTTCAACGTGTGTAGTAGCTTAAGAACAATTCAAACCAGCCGTCCCAAACGTTTAAAAGTACTCGCTGCAGTTTAGAGCGCAACTTGATTCTTCAGCATTCTTCAGCCCGTGTAAATAGCCGTAGCCGTAGTTAATATAGCCGTACTTAAATGTAACGCACTCTTCGAGCACAATTTTAACGTATTCACCCGCATCTCACCCGCATCTTTACTTAGTTCAATACTTAGTTCAATTTGGCGGCAATTA

Full Affymetrix probeset data:

Annotations for 1635796_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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