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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635826_s_at:

>probe:Drosophila_2:1635826_s_at:603:447; Interrogation_Position=3613; Antisense; GATCCTTCATCCACACATATAATCG
>probe:Drosophila_2:1635826_s_at:374:703; Interrogation_Position=3682; Antisense; TTATTGGTTGTGTACGGTGCGGCTT
>probe:Drosophila_2:1635826_s_at:615:669; Interrogation_Position=3694; Antisense; TACGGTGCGGCTTAAACTGACATTA
>probe:Drosophila_2:1635826_s_at:475:475; Interrogation_Position=3843; Antisense; GTTTTAATGTTCCAAAAGTTGCACT
>probe:Drosophila_2:1635826_s_at:139:469; Interrogation_Position=3860; Antisense; GTTGCACTTTTAAAAACGCACTGTA
>probe:Drosophila_2:1635826_s_at:498:395; Interrogation_Position=3918; Antisense; GACAATTTCTCAATCCTAATGCAAA
>probe:Drosophila_2:1635826_s_at:701:563; Interrogation_Position=3965; Antisense; GGAAGGTCAATTATACACATATGTT
>probe:Drosophila_2:1635826_s_at:106:319; Interrogation_Position=4003; Antisense; GCCCGAGAAAAACATTACAACTATT
>probe:Drosophila_2:1635826_s_at:71:253; Interrogation_Position=4020; Antisense; CAACTATTCGCTTAAAATTTCCTAT
>probe:Drosophila_2:1635826_s_at:478:717; Interrogation_Position=4038; Antisense; TTCCTATAAGCATCTAAACCATTTG
>probe:Drosophila_2:1635826_s_at:555:467; Interrogation_Position=4103; Antisense; GTTGATTTAACATATTGCACCCATA
>probe:Drosophila_2:1635826_s_at:586:351; Interrogation_Position=4119; Antisense; GCACCCATAAGAGCAATTCAAATTG
>probe:Drosophila_2:1635826_s_at:209:247; Interrogation_Position=4139; Antisense; AATTGTATTTCCTTTCTGAATTGTA
>probe:Drosophila_2:1635826_s_at:272:137; Interrogation_Position=4183; Antisense; ACGTAAGACCAATGTAGCTAATGCT

Paste this into a BLAST search page for me
GATCCTTCATCCACACATATAATCGTTATTGGTTGTGTACGGTGCGGCTTTACGGTGCGGCTTAAACTGACATTAGTTTTAATGTTCCAAAAGTTGCACTGTTGCACTTTTAAAAACGCACTGTAGACAATTTCTCAATCCTAATGCAAAGGAAGGTCAATTATACACATATGTTGCCCGAGAAAAACATTACAACTATTCAACTATTCGCTTAAAATTTCCTATTTCCTATAAGCATCTAAACCATTTGGTTGATTTAACATATTGCACCCATAGCACCCATAAGAGCAATTCAAATTGAATTGTATTTCCTTTCTGAATTGTAACGTAAGACCAATGTAGCTAATGCT

Full Affymetrix probeset data:

Annotations for 1635826_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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