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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635827_s_at:

>probe:Drosophila_2:1635827_s_at:403:259; Interrogation_Position=3279; Antisense; CACTATGACGTGTTCGTCTGTGACA
>probe:Drosophila_2:1635827_s_at:250:499; Interrogation_Position=3294; Antisense; GTCTGTGACAAAGCATTACGTTTAG
>probe:Drosophila_2:1635827_s_at:57:17; Interrogation_Position=3427; Antisense; ATTTAATTCGCGTGCTAAGCCTATG
>probe:Drosophila_2:1635827_s_at:36:137; Interrogation_Position=3477; Antisense; ACGAGAGCAGCAACGCAGGGATTGA
>probe:Drosophila_2:1635827_s_at:5:247; Interrogation_Position=3537; Antisense; AATTGCTTTATGTAACCCCATCCTT
>probe:Drosophila_2:1635827_s_at:359:59; Interrogation_Position=3546; Antisense; ATGTAACCCCATCCTTTATTGGCTT
>probe:Drosophila_2:1635827_s_at:309:727; Interrogation_Position=3564; Antisense; TTGGCTTCCAATGCTGAAAATGCGC
>probe:Drosophila_2:1635827_s_at:584:149; Interrogation_Position=3624; Antisense; ACTTGTTTGTTTGAGTCATCAGGGC
>probe:Drosophila_2:1635827_s_at:571:267; Interrogation_Position=3643; Antisense; CAGGGCAGAGTTTGCAATGCATTTC
>probe:Drosophila_2:1635827_s_at:394:617; Interrogation_Position=3660; Antisense; TGCATTTCAAATGCGCCACATGCGA
>probe:Drosophila_2:1635827_s_at:624:51; Interrogation_Position=3679; Antisense; ATGCGATTGCCTTTTTAGTCAGCTA
>probe:Drosophila_2:1635827_s_at:404:263; Interrogation_Position=3698; Antisense; CAGCTATTAGAGACACGAGGACCAT
>probe:Drosophila_2:1635827_s_at:175:293; Interrogation_Position=3713; Antisense; CGAGGACCATATTACGTTTGTTTGA
>probe:Drosophila_2:1635827_s_at:217:255; Interrogation_Position=3793; Antisense; CACTTAGCTTTGTACGTGAACCTTA

Paste this into a BLAST search page for me
CACTATGACGTGTTCGTCTGTGACAGTCTGTGACAAAGCATTACGTTTAGATTTAATTCGCGTGCTAAGCCTATGACGAGAGCAGCAACGCAGGGATTGAAATTGCTTTATGTAACCCCATCCTTATGTAACCCCATCCTTTATTGGCTTTTGGCTTCCAATGCTGAAAATGCGCACTTGTTTGTTTGAGTCATCAGGGCCAGGGCAGAGTTTGCAATGCATTTCTGCATTTCAAATGCGCCACATGCGAATGCGATTGCCTTTTTAGTCAGCTACAGCTATTAGAGACACGAGGACCATCGAGGACCATATTACGTTTGTTTGACACTTAGCTTTGTACGTGAACCTTA

Full Affymetrix probeset data:

Annotations for 1635827_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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