FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635840_s_at:

>probe:Drosophila_2:1635840_s_at:661:243; Interrogation_Position=3136; Antisense; AATTTCGCGTTCGTATTTCCACTAG
>probe:Drosophila_2:1635840_s_at:391:293; Interrogation_Position=3143; Antisense; CGTTCGTATTTCCACTAGCTGAGTA
>probe:Drosophila_2:1635840_s_at:345:539; Interrogation_Position=3226; Antisense; GGTTTCGTTATGCTATATATTCCCC
>probe:Drosophila_2:1635840_s_at:211:647; Interrogation_Position=3254; Antisense; TCAAACAACTTCCACTCAAATCAAC
>probe:Drosophila_2:1635840_s_at:530:239; Interrogation_Position=3272; Antisense; AATCAACTCCCAAATATCTTTTAGG
>probe:Drosophila_2:1635840_s_at:547:73; Interrogation_Position=3294; Antisense; AGGAGCATTCTACAATCTGATTTTT
>probe:Drosophila_2:1635840_s_at:343:493; Interrogation_Position=3319; Antisense; GTAATCATCCAGCAAACGTTTCCAA
>probe:Drosophila_2:1635840_s_at:562:697; Interrogation_Position=3395; Antisense; TTTAAAGCAATTCTGCAGCTGCAGC
>probe:Drosophila_2:1635840_s_at:434:353; Interrogation_Position=3409; Antisense; GCAGCTGCAGCAAAGATAATCTATT
>probe:Drosophila_2:1635840_s_at:2:637; Interrogation_Position=3470; Antisense; TCGTTCAACGAACAGCGAATTATAG
>probe:Drosophila_2:1635840_s_at:53:27; Interrogation_Position=3491; Antisense; ATAGATTGCTTTGCCCAAAATGTGG
>probe:Drosophila_2:1635840_s_at:243:301; Interrogation_Position=3504; Antisense; CCCAAAATGTGGATGCTGTGAGCTA
>probe:Drosophila_2:1635840_s_at:485:697; Interrogation_Position=3599; Antisense; TTTTTTGAGCACGTGAACCTAGGAT
>probe:Drosophila_2:1635840_s_at:88:711; Interrogation_Position=3636; Antisense; TTCAAGTAAGCCATATATACCCATA

Paste this into a BLAST search page for me
AATTTCGCGTTCGTATTTCCACTAGCGTTCGTATTTCCACTAGCTGAGTAGGTTTCGTTATGCTATATATTCCCCTCAAACAACTTCCACTCAAATCAACAATCAACTCCCAAATATCTTTTAGGAGGAGCATTCTACAATCTGATTTTTGTAATCATCCAGCAAACGTTTCCAATTTAAAGCAATTCTGCAGCTGCAGCGCAGCTGCAGCAAAGATAATCTATTTCGTTCAACGAACAGCGAATTATAGATAGATTGCTTTGCCCAAAATGTGGCCCAAAATGTGGATGCTGTGAGCTATTTTTTGAGCACGTGAACCTAGGATTTCAAGTAAGCCATATATACCCATA

Full Affymetrix probeset data:

Annotations for 1635840_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720