FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635861_a_at:

>probe:Drosophila_2:1635861_a_at:685:183; Interrogation_Position=1653; Antisense; AAAAGGCGCTGGTACATCATCCGGA
>probe:Drosophila_2:1635861_a_at:524:35; Interrogation_Position=1668; Antisense; ATCATCCGGATCGACACGCAAACAG
>probe:Drosophila_2:1635861_a_at:323:439; Interrogation_Position=1742; Antisense; GAGGCGTACGCCATACTGTCGGATG
>probe:Drosophila_2:1635861_a_at:580:597; Interrogation_Position=1758; Antisense; TGTCGGATGCTCACAAGAAGTCGCG
>probe:Drosophila_2:1635861_a_at:651:109; Interrogation_Position=1773; Antisense; AGAAGTCGCGCTACGACAGCGGCCA
>probe:Drosophila_2:1635861_a_at:729:547; Interrogation_Position=1807; Antisense; GGAGCAGGAGCAAGCCGACTTCGAT
>probe:Drosophila_2:1635861_a_at:639:449; Interrogation_Position=1829; Antisense; GATCCGAATCAAATGTTCCGCACAT
>probe:Drosophila_2:1635861_a_at:354:151; Interrogation_Position=1850; Antisense; ACATTCTTCCAATTCAACGGCGGTG
>probe:Drosophila_2:1635861_a_at:11:289; Interrogation_Position=1867; Antisense; CGGCGGTGGCCGGAATAATTCATCG
>probe:Drosophila_2:1635861_a_at:723:645; Interrogation_Position=1886; Antisense; TCATCGTTCAACTTTGAGTTCTAGG
>probe:Drosophila_2:1635861_a_at:235:427; Interrogation_Position=1901; Antisense; GAGTTCTAGGATCCCAACGAGTGTT
>probe:Drosophila_2:1635861_a_at:382:85; Interrogation_Position=1920; Antisense; AGTGTTGTTCACCACCACAGAGAAG
>probe:Drosophila_2:1635861_a_at:260:375; Interrogation_Position=1941; Antisense; GAAGAAGACCATCTCAATCCCATAC
>probe:Drosophila_2:1635861_a_at:26:393; Interrogation_Position=1980; Antisense; GAAACCAACATACAGCAGCGCACAA

Paste this into a BLAST search page for me
AAAAGGCGCTGGTACATCATCCGGAATCATCCGGATCGACACGCAAACAGGAGGCGTACGCCATACTGTCGGATGTGTCGGATGCTCACAAGAAGTCGCGAGAAGTCGCGCTACGACAGCGGCCAGGAGCAGGAGCAAGCCGACTTCGATGATCCGAATCAAATGTTCCGCACATACATTCTTCCAATTCAACGGCGGTGCGGCGGTGGCCGGAATAATTCATCGTCATCGTTCAACTTTGAGTTCTAGGGAGTTCTAGGATCCCAACGAGTGTTAGTGTTGTTCACCACCACAGAGAAGGAAGAAGACCATCTCAATCCCATACGAAACCAACATACAGCAGCGCACAA

Full Affymetrix probeset data:

Annotations for 1635861_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720