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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635955_at:

>probe:Drosophila_2:1635955_at:322:629; Interrogation_Position=1838; Antisense; TCCACTATGCGCGAGCCTACGAAAA
>probe:Drosophila_2:1635955_at:253:63; Interrogation_Position=1880; Antisense; ATGTGAAGGCCAAACAACCCGCTTA
>probe:Drosophila_2:1635955_at:60:371; Interrogation_Position=1939; Antisense; GAATGGAGTACTCTTGCGGCAGCCA
>probe:Drosophila_2:1635955_at:308:597; Interrogation_Position=1964; Antisense; TGTGCCACGGAGACGATCCTAGCAA
>probe:Drosophila_2:1635955_at:51:177; Interrogation_Position=1996; Antisense; AAACCGAAGCCTACGCTCTGCGAGG
>probe:Drosophila_2:1635955_at:483:713; Interrogation_Position=2033; Antisense; TTCAGTCACCAAATCTTCAGCTCAA
>probe:Drosophila_2:1635955_at:69:713; Interrogation_Position=2048; Antisense; TTCAGCTCAACTGCGCGGGCAACAT
>probe:Drosophila_2:1635955_at:565:697; Interrogation_Position=2077; Antisense; TTTAAGTTTGCAGGATGCCGCCCGG
>probe:Drosophila_2:1635955_at:500:379; Interrogation_Position=2109; Antisense; GAAGCCGAAGGTTGCGACTGTTCCC
>probe:Drosophila_2:1635955_at:118:709; Interrogation_Position=2222; Antisense; TTAAGCCCCTGACCAACGTGAGAAA
>probe:Drosophila_2:1635955_at:197:171; Interrogation_Position=2244; Antisense; AAAGTGGTCGCCCATCAGTGGCTAT
>probe:Drosophila_2:1635955_at:40:521; Interrogation_Position=2261; Antisense; GTGGCTATCACTACCTAAGGATCTG
>probe:Drosophila_2:1635955_at:336:529; Interrogation_Position=2338; Antisense; GGGATCTCAATAAAACTCTTCGTTT
>probe:Drosophila_2:1635955_at:76:639; Interrogation_Position=2357; Antisense; TCGTTTACTTTAGACTTCCTCTTCG

Paste this into a BLAST search page for me
TCCACTATGCGCGAGCCTACGAAAAATGTGAAGGCCAAACAACCCGCTTAGAATGGAGTACTCTTGCGGCAGCCATGTGCCACGGAGACGATCCTAGCAAAAACCGAAGCCTACGCTCTGCGAGGTTCAGTCACCAAATCTTCAGCTCAATTCAGCTCAACTGCGCGGGCAACATTTTAAGTTTGCAGGATGCCGCCCGGGAAGCCGAAGGTTGCGACTGTTCCCTTAAGCCCCTGACCAACGTGAGAAAAAAGTGGTCGCCCATCAGTGGCTATGTGGCTATCACTACCTAAGGATCTGGGGATCTCAATAAAACTCTTCGTTTTCGTTTACTTTAGACTTCCTCTTCG

Full Affymetrix probeset data:

Annotations for 1635955_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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