FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1635963_a_at:

>probe:Drosophila_2:1635963_a_at:240:651; Interrogation_Position=2635; Antisense; TCACGCCCACTCATGCGATATGTTA
>probe:Drosophila_2:1635963_a_at:323:93; Interrogation_Position=2666; Antisense; AGTTAAGTTGCCAGTTGCACCTCGC
>probe:Drosophila_2:1635963_a_at:334:617; Interrogation_Position=2681; Antisense; TGCACCTCGCGATCGATCAGATATA
>probe:Drosophila_2:1635963_a_at:615:5; Interrogation_Position=2721; Antisense; ATTGTTAATGCTTACACGGCCTGCG
>probe:Drosophila_2:1635963_a_at:648:281; Interrogation_Position=2741; Antisense; CTGCGTTTAGCCCACTTTAACTATA
>probe:Drosophila_2:1635963_a_at:682:145; Interrogation_Position=2771; Antisense; ACTAATGTATAACTCTGTCCCGCTC
>probe:Drosophila_2:1635963_a_at:448:17; Interrogation_Position=2797; Antisense; ATTTCGATTCCCCATTTCCGATTAT
>probe:Drosophila_2:1635963_a_at:163:19; Interrogation_Position=2810; Antisense; ATTTCCGATTATGTGCCTCACTCTC
>probe:Drosophila_2:1635963_a_at:118:365; Interrogation_Position=2853; Antisense; GAATATGTACTTCCAGTCGCATCCG
>probe:Drosophila_2:1635963_a_at:686:45; Interrogation_Position=2873; Antisense; ATCCGATCCGGTTGCAGACTATATT
>probe:Drosophila_2:1635963_a_at:342:339; Interrogation_Position=2941; Antisense; GCTCACCGGCTAATCTTCAATTATT
>probe:Drosophila_2:1635963_a_at:230:629; Interrogation_Position=2969; Antisense; TCCGGCAAATGGATGGTCACTTTTT
>probe:Drosophila_2:1635963_a_at:601:247; Interrogation_Position=3016; Antisense; CATAACTTTTTAGGCGACACAACGT
>probe:Drosophila_2:1635963_a_at:78:491; Interrogation_Position=3091; Antisense; GTAAACTTTGTAGCTTCCTAATTGA

Paste this into a BLAST search page for me
TCACGCCCACTCATGCGATATGTTAAGTTAAGTTGCCAGTTGCACCTCGCTGCACCTCGCGATCGATCAGATATAATTGTTAATGCTTACACGGCCTGCGCTGCGTTTAGCCCACTTTAACTATAACTAATGTATAACTCTGTCCCGCTCATTTCGATTCCCCATTTCCGATTATATTTCCGATTATGTGCCTCACTCTCGAATATGTACTTCCAGTCGCATCCGATCCGATCCGGTTGCAGACTATATTGCTCACCGGCTAATCTTCAATTATTTCCGGCAAATGGATGGTCACTTTTTCATAACTTTTTAGGCGACACAACGTGTAAACTTTGTAGCTTCCTAATTGA

Full Affymetrix probeset data:

Annotations for 1635963_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720