Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636020_s_at:

>probe:Drosophila_2:1636020_s_at:494:507; Interrogation_Position=1093; Antisense; GTGCGGTCATTTTCTACAGTTCATA
>probe:Drosophila_2:1636020_s_at:450:151; Interrogation_Position=1143; Antisense; ACATTAGACGTAACATCCCACAGCG
>probe:Drosophila_2:1636020_s_at:668:659; Interrogation_Position=1153; Antisense; TAACATCCCACAGCGTAAACCATAA
>probe:Drosophila_2:1636020_s_at:280:661; Interrogation_Position=1175; Antisense; TAACGCGTAATGATACTTCCCCACG
>probe:Drosophila_2:1636020_s_at:730:679; Interrogation_Position=1226; Antisense; TATGCTTAGTTGACCCCATGATCGG
>probe:Drosophila_2:1636020_s_at:673:451; Interrogation_Position=1245; Antisense; GATCGGTGATTTAATTCGCGCCCAG
>probe:Drosophila_2:1636020_s_at:347:321; Interrogation_Position=1264; Antisense; GCCCAGTTCTCAGCTCTGTACAAAA
>probe:Drosophila_2:1636020_s_at:121:521; Interrogation_Position=1341; Antisense; GTGGAAACACTTTATATGCAGCGTA
>probe:Drosophila_2:1636020_s_at:376:703; Interrogation_Position=1386; Antisense; TTAGTTGTAATTTGCCATCGGGTCT
>probe:Drosophila_2:1636020_s_at:615:623; Interrogation_Position=1398; Antisense; TGCCATCGGGTCTTAGCTCTAAAAC
>probe:Drosophila_2:1636020_s_at:63:189; Interrogation_Position=1534; Antisense; AACACCTTTTTCATAGTGATCGCAT
>probe:Drosophila_2:1636020_s_at:336:603; Interrogation_Position=1550; Antisense; TGATCGCATATTACACACTTTACAT
>probe:Drosophila_2:1636020_s_at:392:185; Interrogation_Position=1585; Antisense; AAAATCGAAATAGTTGCCGGCAACG
>probe:Drosophila_2:1636020_s_at:513:251; Interrogation_Position=1605; Antisense; CAACGCCAGTTGCTAAACATTTTTA

Paste this into a BLAST search page for me
GTGCGGTCATTTTCTACAGTTCATAACATTAGACGTAACATCCCACAGCGTAACATCCCACAGCGTAAACCATAATAACGCGTAATGATACTTCCCCACGTATGCTTAGTTGACCCCATGATCGGGATCGGTGATTTAATTCGCGCCCAGGCCCAGTTCTCAGCTCTGTACAAAAGTGGAAACACTTTATATGCAGCGTATTAGTTGTAATTTGCCATCGGGTCTTGCCATCGGGTCTTAGCTCTAAAACAACACCTTTTTCATAGTGATCGCATTGATCGCATATTACACACTTTACATAAAATCGAAATAGTTGCCGGCAACGCAACGCCAGTTGCTAAACATTTTTA

Full Affymetrix probeset data:

Annotations for 1636020_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime