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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636039_at:

>probe:Drosophila_2:1636039_at:42:105; Interrogation_Position=1014; Antisense; AGACCGCAGATTCTCCGTTTGGACG
>probe:Drosophila_2:1636039_at:101:647; Interrogation_Position=1057; Antisense; TCACTCACGAGCTTCCAAAACATGT
>probe:Drosophila_2:1636039_at:478:209; Interrogation_Position=1103; Antisense; AAGAAGTTGGTTCCGCCATAGTCCA
>probe:Drosophila_2:1636039_at:656:593; Interrogation_Position=550; Antisense; TGTGTACGAGTTGATCTGGCCGGCA
>probe:Drosophila_2:1636039_at:302:555; Interrogation_Position=576; Antisense; GGACCTCACCGATTATCTATGCAAG
>probe:Drosophila_2:1636039_at:431:525; Interrogation_Position=627; Antisense; GGGCACCTCTGCTGAACGGGAAATC
>probe:Drosophila_2:1636039_at:492:423; Interrogation_Position=667; Antisense; GAGAAACTCTGCTATGTGTCAATGA
>probe:Drosophila_2:1636039_at:316:533; Interrogation_Position=723; Antisense; GGTGGAAACCTATGAGCTGCCAGAT
>probe:Drosophila_2:1636039_at:602:79; Interrogation_Position=824; Antisense; AGGTGATGGGCATCCACGAGGCCAC
>probe:Drosophila_2:1636039_at:577:253; Interrogation_Position=864; Antisense; CAACTGCGACATGGATCTGCGAAAG
>probe:Drosophila_2:1636039_at:488:683; Interrogation_Position=895; Antisense; TATGCGAACATTGTTCTCTCTGGCG
>probe:Drosophila_2:1636039_at:280:641; Interrogation_Position=913; Antisense; TCTGGCGGTACGACCATGTTTCGTA
>probe:Drosophila_2:1636039_at:707:675; Interrogation_Position=948; Antisense; TAGATTCCTGCAAGACCTAACCGAA
>probe:Drosophila_2:1636039_at:493:221; Interrogation_Position=997; Antisense; AAGGTTAACGCTAGTCCAGACCGCA

Paste this into a BLAST search page for me
AGACCGCAGATTCTCCGTTTGGACGTCACTCACGAGCTTCCAAAACATGTAAGAAGTTGGTTCCGCCATAGTCCATGTGTACGAGTTGATCTGGCCGGCAGGACCTCACCGATTATCTATGCAAGGGGCACCTCTGCTGAACGGGAAATCGAGAAACTCTGCTATGTGTCAATGAGGTGGAAACCTATGAGCTGCCAGATAGGTGATGGGCATCCACGAGGCCACCAACTGCGACATGGATCTGCGAAAGTATGCGAACATTGTTCTCTCTGGCGTCTGGCGGTACGACCATGTTTCGTATAGATTCCTGCAAGACCTAACCGAAAAGGTTAACGCTAGTCCAGACCGCA

Full Affymetrix probeset data:

Annotations for 1636039_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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