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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636071_a_at:

>probe:Drosophila_2:1636071_a_at:320:613; Interrogation_Position=2462; Antisense; TGAACCAGAAGCGTCTGTTCCTCAT
>probe:Drosophila_2:1636071_a_at:216:603; Interrogation_Position=2477; Antisense; TGTTCCTCATCGTCTTCCAGAGATT
>probe:Drosophila_2:1636071_a_at:117:463; Interrogation_Position=2498; Antisense; GATTCATTATGATACTCTCCGAGCA
>probe:Drosophila_2:1636071_a_at:686:39; Interrogation_Position=2522; Antisense; ATCTGCTGCGCTCCGATACGGACGG
>probe:Drosophila_2:1636071_a_at:195:29; Interrogation_Position=2537; Antisense; ATACGGACGGCCGTGATCCAGACAC
>probe:Drosophila_2:1636071_a_at:86:107; Interrogation_Position=2556; Antisense; AGACACGGATTGGTATCGCTGGACA
>probe:Drosophila_2:1636071_a_at:625:43; Interrogation_Position=2570; Antisense; ATCGCTGGACAATCGGACGACTGCA
>probe:Drosophila_2:1636071_a_at:6:269; Interrogation_Position=2596; Antisense; CAGGTCTTCCTTATGCATCATGAGC
>probe:Drosophila_2:1636071_a_at:155:163; Interrogation_Position=2629; Antisense; AAATACAGCAGCACTTTGGAAACGC
>probe:Drosophila_2:1636071_a_at:310:691; Interrogation_Position=2643; Antisense; TTTGGAAACGCTGCTATTCACATCC
>probe:Drosophila_2:1636071_a_at:154:303; Interrogation_Position=2666; Antisense; CCGACCTGGACACACACATCTTGGA
>probe:Drosophila_2:1636071_a_at:42:523; Interrogation_Position=2707; Antisense; GTGGCCCTGCGTGCCTAAAGATGGA
>probe:Drosophila_2:1636071_a_at:543:399; Interrogation_Position=2790; Antisense; GAGTTTGTAAAGTTCGCCCAGTTAG
>probe:Drosophila_2:1636071_a_at:704:395; Interrogation_Position=2841; Antisense; GAAATTAGCCGTTGCATACCCATGC

Paste this into a BLAST search page for me
TGAACCAGAAGCGTCTGTTCCTCATTGTTCCTCATCGTCTTCCAGAGATTGATTCATTATGATACTCTCCGAGCAATCTGCTGCGCTCCGATACGGACGGATACGGACGGCCGTGATCCAGACACAGACACGGATTGGTATCGCTGGACAATCGCTGGACAATCGGACGACTGCACAGGTCTTCCTTATGCATCATGAGCAAATACAGCAGCACTTTGGAAACGCTTTGGAAACGCTGCTATTCACATCCCCGACCTGGACACACACATCTTGGAGTGGCCCTGCGTGCCTAAAGATGGAGAGTTTGTAAAGTTCGCCCAGTTAGGAAATTAGCCGTTGCATACCCATGC

Full Affymetrix probeset data:

Annotations for 1636071_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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