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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636076_a_at:

>probe:Drosophila_2:1636076_a_at:385:85; Interrogation_Position=2649; Antisense; AGTGATGACTGTGCGCACACTGGAA
>probe:Drosophila_2:1636076_a_at:636:631; Interrogation_Position=2679; Antisense; TCCGGCAGCGCCACGTAATGTCAAG
>probe:Drosophila_2:1636076_a_at:586:229; Interrogation_Position=2695; Antisense; AATGTCAAGGCTGCAACACAACCGC
>probe:Drosophila_2:1636076_a_at:137:293; Interrogation_Position=2721; Antisense; CGACTCATTCTTTCAGCTAATGCCA
>probe:Drosophila_2:1636076_a_at:275:381; Interrogation_Position=2802; Antisense; GAACGGATTCCTCATCACGTGGCAG
>probe:Drosophila_2:1636076_a_at:419:523; Interrogation_Position=2840; Antisense; GGGCGCATATCGTCAAGTTCTACAC
>probe:Drosophila_2:1636076_a_at:571:89; Interrogation_Position=2855; Antisense; AGTTCTACACCATCAAGTACCGGAC
>probe:Drosophila_2:1636076_a_at:645:85; Interrogation_Position=2870; Antisense; AGTACCGGACGGACGCGCAATGGAA
>probe:Drosophila_2:1636076_a_at:695:591; Interrogation_Position=2951; Antisense; TGGTGGGCGGAAGGACCTACTACTT
>probe:Drosophila_2:1636076_a_at:558:325; Interrogation_Position=2978; Antisense; GCGTGCTGGCCAACTCGGAGAAGTC
>probe:Drosophila_2:1636076_a_at:479:373; Interrogation_Position=2997; Antisense; GAAGTCGTACGAGTCCAGCGACGAG
>probe:Drosophila_2:1636076_a_at:466:137; Interrogation_Position=3017; Antisense; ACGAGGTGAAGTTCCCTGTGCCGGC
>probe:Drosophila_2:1636076_a_at:589:565; Interrogation_Position=3039; Antisense; GGCACGTGTCAAGCACAAGGCGATT
>probe:Drosophila_2:1636076_a_at:5:647; Interrogation_Position=3107; Antisense; TCATTTTATCGGTTTGTGCCGTAAA

Paste this into a BLAST search page for me
AGTGATGACTGTGCGCACACTGGAATCCGGCAGCGCCACGTAATGTCAAGAATGTCAAGGCTGCAACACAACCGCCGACTCATTCTTTCAGCTAATGCCAGAACGGATTCCTCATCACGTGGCAGGGGCGCATATCGTCAAGTTCTACACAGTTCTACACCATCAAGTACCGGACAGTACCGGACGGACGCGCAATGGAATGGTGGGCGGAAGGACCTACTACTTGCGTGCTGGCCAACTCGGAGAAGTCGAAGTCGTACGAGTCCAGCGACGAGACGAGGTGAAGTTCCCTGTGCCGGCGGCACGTGTCAAGCACAAGGCGATTTCATTTTATCGGTTTGTGCCGTAAA

Full Affymetrix probeset data:

Annotations for 1636076_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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