FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636080_a_at:

>probe:Drosophila_2:1636080_a_at:214:673; Interrogation_Position=5072; Antisense; TAGCACCCCAACAACTTTTAAGACT
>probe:Drosophila_2:1636080_a_at:167:159; Interrogation_Position=5128; Antisense; ACACACGGACACTTTAGTACAGGCA
>probe:Drosophila_2:1636080_a_at:119:371; Interrogation_Position=5167; Antisense; GAATGTGACTCTTCAGGTGCCATAC
>probe:Drosophila_2:1636080_a_at:336:535; Interrogation_Position=5182; Antisense; GGTGCCATACACAAACATAAACAAT
>probe:Drosophila_2:1636080_a_at:245:455; Interrogation_Position=5222; Antisense; GATAATCGCGTATCAATCCTCCAAC
>probe:Drosophila_2:1636080_a_at:367:685; Interrogation_Position=5232; Antisense; TATCAATCCTCCAACTTATACTCAG
>probe:Drosophila_2:1636080_a_at:120:643; Interrogation_Position=5262; Antisense; TCTACCGTAATGATGACCACCCGAT
>probe:Drosophila_2:1636080_a_at:253:719; Interrogation_Position=5304; Antisense; TTCCCCTGCCAACTGTGTGGATATA
>probe:Drosophila_2:1636080_a_at:4:255; Interrogation_Position=5351; Antisense; CAAATTTTCCAATGTACCGTCAAAG
>probe:Drosophila_2:1636080_a_at:698:481; Interrogation_Position=5364; Antisense; GTACCGTCAAAGCATTTATAACTGT
>probe:Drosophila_2:1636080_a_at:618:265; Interrogation_Position=5475; Antisense; CAGTTAGTCGTTTCACTTTATCAAG
>probe:Drosophila_2:1636080_a_at:606:651; Interrogation_Position=5495; Antisense; TCAAGTATCTACTCATTATTTCATA
>probe:Drosophila_2:1636080_a_at:511:247; Interrogation_Position=5556; Antisense; CAAAGTAAGTGCTCCGAATACGGTT
>probe:Drosophila_2:1636080_a_at:240:631; Interrogation_Position=5568; Antisense; TCCGAATACGGTTTGTTTTCACTGT

Paste this into a BLAST search page for me
TAGCACCCCAACAACTTTTAAGACTACACACGGACACTTTAGTACAGGCAGAATGTGACTCTTCAGGTGCCATACGGTGCCATACACAAACATAAACAATGATAATCGCGTATCAATCCTCCAACTATCAATCCTCCAACTTATACTCAGTCTACCGTAATGATGACCACCCGATTTCCCCTGCCAACTGTGTGGATATACAAATTTTCCAATGTACCGTCAAAGGTACCGTCAAAGCATTTATAACTGTCAGTTAGTCGTTTCACTTTATCAAGTCAAGTATCTACTCATTATTTCATACAAAGTAAGTGCTCCGAATACGGTTTCCGAATACGGTTTGTTTTCACTGT

Full Affymetrix probeset data:

Annotations for 1636080_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720