FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636092_a_at:

>probe:Drosophila_2:1636092_a_at:324:231; Interrogation_Position=4506; Antisense; AATGCACCTAGTTTCAGTCAGCTAT
>probe:Drosophila_2:1636092_a_at:383:51; Interrogation_Position=4586; Antisense; ATGCGATCTGTTTTTGCGTTTGTAT
>probe:Drosophila_2:1636092_a_at:381:199; Interrogation_Position=4612; Antisense; AACCCAAAGTGATAGCGAATTCCTG
>probe:Drosophila_2:1636092_a_at:545:363; Interrogation_Position=4628; Antisense; GAATTCCTGAGCATGGTCTGCGTTT
>probe:Drosophila_2:1636092_a_at:488:347; Interrogation_Position=4638; Antisense; GCATGGTCTGCGTTTTAACTAAAGA
>probe:Drosophila_2:1636092_a_at:343:325; Interrogation_Position=4689; Antisense; GCGACACCCCGAACAACACAAAGAT
>probe:Drosophila_2:1636092_a_at:19:449; Interrogation_Position=4711; Antisense; GATCCAAATCCCCACTAATATGAGT
>probe:Drosophila_2:1636092_a_at:499:101; Interrogation_Position=4761; Antisense; AGCAGCTAAATGTCGGCTTACCCTC
>probe:Drosophila_2:1636092_a_at:610:167; Interrogation_Position=4768; Antisense; AAATGTCGGCTTACCCTCGAAAGCA
>probe:Drosophila_2:1636092_a_at:175:649; Interrogation_Position=4817; Antisense; TCAGCGATTTTATCGGACGCGTCTT
>probe:Drosophila_2:1636092_a_at:469:405; Interrogation_Position=4832; Antisense; GACGCGTCTTAGGTTTATTTCGAAT
>probe:Drosophila_2:1636092_a_at:669:465; Interrogation_Position=4908; Antisense; GATTGTAAAACAAGCGCTCTTAGCA
>probe:Drosophila_2:1636092_a_at:218:339; Interrogation_Position=4923; Antisense; GCTCTTAGCAAAAACGCTGCAGCAG
>probe:Drosophila_2:1636092_a_at:114:417; Interrogation_Position=4951; Antisense; GAGCGAGAGCGATAGACATGTGTAA

Paste this into a BLAST search page for me
AATGCACCTAGTTTCAGTCAGCTATATGCGATCTGTTTTTGCGTTTGTATAACCCAAAGTGATAGCGAATTCCTGGAATTCCTGAGCATGGTCTGCGTTTGCATGGTCTGCGTTTTAACTAAAGAGCGACACCCCGAACAACACAAAGATGATCCAAATCCCCACTAATATGAGTAGCAGCTAAATGTCGGCTTACCCTCAAATGTCGGCTTACCCTCGAAAGCATCAGCGATTTTATCGGACGCGTCTTGACGCGTCTTAGGTTTATTTCGAATGATTGTAAAACAAGCGCTCTTAGCAGCTCTTAGCAAAAACGCTGCAGCAGGAGCGAGAGCGATAGACATGTGTAA

Full Affymetrix probeset data:

Annotations for 1636092_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720