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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636141_s_at:

>probe:Drosophila_2:1636141_s_at:64:561; Interrogation_Position=3505; Antisense; GGAAACCACTTTCGAAACACTCACT
>probe:Drosophila_2:1636141_s_at:11:697; Interrogation_Position=3514; Antisense; TTTCGAAACACTCACTCGCATTGGG
>probe:Drosophila_2:1636141_s_at:50:535; Interrogation_Position=3539; Antisense; GGTCAGTAGTTAGAAGCTCAGAGCA
>probe:Drosophila_2:1636141_s_at:201:103; Interrogation_Position=3558; Antisense; AGAGCAGTCCGCTTTGCTTGTATGT
>probe:Drosophila_2:1636141_s_at:45:505; Interrogation_Position=3564; Antisense; GTCCGCTTTGCTTGTATGTAATTTG
>probe:Drosophila_2:1636141_s_at:26:515; Interrogation_Position=3624; Antisense; GTGTGAATCAAACTCAACTCTTCAG
>probe:Drosophila_2:1636141_s_at:310:193; Interrogation_Position=3634; Antisense; AACTCAACTCTTCAGAACCAAGTGT
>probe:Drosophila_2:1636141_s_at:194:167; Interrogation_Position=3660; Antisense; AAATCCTATATTTTGAGCAGCTAAA
>probe:Drosophila_2:1636141_s_at:153:609; Interrogation_Position=3673; Antisense; TGAGCAGCTAAACCCAACACAGAGA
>probe:Drosophila_2:1636141_s_at:273:187; Interrogation_Position=3688; Antisense; AACACAGAGAGAGCCGCATCAACAA
>probe:Drosophila_2:1636141_s_at:190:345; Interrogation_Position=3703; Antisense; GCATCAACAACCGAAACCGAAAAGT
>probe:Drosophila_2:1636141_s_at:377:233; Interrogation_Position=3816; Antisense; AATGCGAGCGGCGAAATTGTAATAA
>probe:Drosophila_2:1636141_s_at:10:679; Interrogation_Position=3849; Antisense; TAGAGTGCAGCACACGCTTCGATTT
>probe:Drosophila_2:1636141_s_at:408:357; Interrogation_Position=3858; Antisense; GCACACGCTTCGATTTTTAATTTTA

Paste this into a BLAST search page for me
GGAAACCACTTTCGAAACACTCACTTTTCGAAACACTCACTCGCATTGGGGGTCAGTAGTTAGAAGCTCAGAGCAAGAGCAGTCCGCTTTGCTTGTATGTGTCCGCTTTGCTTGTATGTAATTTGGTGTGAATCAAACTCAACTCTTCAGAACTCAACTCTTCAGAACCAAGTGTAAATCCTATATTTTGAGCAGCTAAATGAGCAGCTAAACCCAACACAGAGAAACACAGAGAGAGCCGCATCAACAAGCATCAACAACCGAAACCGAAAAGTAATGCGAGCGGCGAAATTGTAATAATAGAGTGCAGCACACGCTTCGATTTGCACACGCTTCGATTTTTAATTTTA

Full Affymetrix probeset data:

Annotations for 1636141_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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