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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636178_at:

>probe:Drosophila_2:1636178_at:648:441; Interrogation_Position=1816; Antisense; GATGTTTTCTAGTTCTTTAAGTCAT
>probe:Drosophila_2:1636178_at:668:457; Interrogation_Position=1847; Antisense; GATATAGGAATAACCCCACTCCCTC
>probe:Drosophila_2:1636178_at:358:157; Interrogation_Position=1897; Antisense; ACACTCACATATATACGATCTTATA
>probe:Drosophila_2:1636178_at:435:685; Interrogation_Position=1965; Antisense; TATAGAACTTTATCTCTCGTCGCCT
>probe:Drosophila_2:1636178_at:438:503; Interrogation_Position=1983; Antisense; GTCGCCTCGACCAGAGAGACAACAA
>probe:Drosophila_2:1636178_at:567:245; Interrogation_Position=2016; Antisense; AATTCATTTTTCATCCAAGCTGTGC
>probe:Drosophila_2:1636178_at:373:699; Interrogation_Position=2023; Antisense; TTTTCATCCAAGCTGTGCTCCTACG
>probe:Drosophila_2:1636178_at:575:649; Interrogation_Position=2116; Antisense; TCACTGTCCTGCACTCACATAAAAT
>probe:Drosophila_2:1636178_at:684:461; Interrogation_Position=2218; Antisense; GATTCACTTAAGTATTCACATTTTT
>probe:Drosophila_2:1636178_at:43:97; Interrogation_Position=2244; Antisense; AGATACATTTTGTTCGTTTCTGTTT
>probe:Drosophila_2:1636178_at:716:601; Interrogation_Position=2254; Antisense; TGTTCGTTTCTGTTTTGCTTGCAAG
>probe:Drosophila_2:1636178_at:322:477; Interrogation_Position=2265; Antisense; GTTTTGCTTGCAAGTCAAACTTATT
>probe:Drosophila_2:1636178_at:314:677; Interrogation_Position=2289; Antisense; TATGTTACGACCTATTTAAAACTGA
>probe:Drosophila_2:1636178_at:252:339; Interrogation_Position=2324; Antisense; GCTAATGACGATCTATGGATGTGTA

Paste this into a BLAST search page for me
GATGTTTTCTAGTTCTTTAAGTCATGATATAGGAATAACCCCACTCCCTCACACTCACATATATACGATCTTATATATAGAACTTTATCTCTCGTCGCCTGTCGCCTCGACCAGAGAGACAACAAAATTCATTTTTCATCCAAGCTGTGCTTTTCATCCAAGCTGTGCTCCTACGTCACTGTCCTGCACTCACATAAAATGATTCACTTAAGTATTCACATTTTTAGATACATTTTGTTCGTTTCTGTTTTGTTCGTTTCTGTTTTGCTTGCAAGGTTTTGCTTGCAAGTCAAACTTATTTATGTTACGACCTATTTAAAACTGAGCTAATGACGATCTATGGATGTGTA

Full Affymetrix probeset data:

Annotations for 1636178_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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