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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636282_s_at:

>probe:Drosophila_2:1636282_s_at:580:347; Interrogation_Position=1028; Antisense; GCAGGTGCCGATTATTCTACGGGCT
>probe:Drosophila_2:1636282_s_at:238:139; Interrogation_Position=1046; Antisense; ACGGGCTATTTTGTATCGCGAGTAC
>probe:Drosophila_2:1636282_s_at:447:459; Interrogation_Position=1142; Antisense; GATTTCCCAGCAAATGTGCAGTCGA
>probe:Drosophila_2:1636282_s_at:689:419; Interrogation_Position=1165; Antisense; GAGCACTTGTTGGTCGTCAGTAGCC
>probe:Drosophila_2:1636282_s_at:691:495; Interrogation_Position=1180; Antisense; GTCAGTAGCCGTACAGCTGGATTTA
>probe:Drosophila_2:1636282_s_at:602:253; Interrogation_Position=751; Antisense; CAACCACCTTTACCACATAGACATT
>probe:Drosophila_2:1636282_s_at:613:663; Interrogation_Position=782; Antisense; TACACACATCTAGCCGGTAAGCGTT
>probe:Drosophila_2:1636282_s_at:163:123; Interrogation_Position=801; Antisense; AGCGTTTGTTTGGAATGCTCTCCAC
>probe:Drosophila_2:1636282_s_at:291:337; Interrogation_Position=817; Antisense; GCTCTCCACGTCTACTTACTTTTAA
>probe:Drosophila_2:1636282_s_at:527:331; Interrogation_Position=869; Antisense; GCGGCCCGAAGCATCTAATTTTTTA
>probe:Drosophila_2:1636282_s_at:584:469; Interrogation_Position=896; Antisense; GTTCTGCACTTGCTTAATTACCAGC
>probe:Drosophila_2:1636282_s_at:402:281; Interrogation_Position=951; Antisense; CTGTAATTTTTCGATGAGGCCCAAA
>probe:Drosophila_2:1636282_s_at:228:171; Interrogation_Position=973; Antisense; AAAGTGGCCACGTGGCACCCAGAAT
>probe:Drosophila_2:1636282_s_at:364:105; Interrogation_Position=993; Antisense; AGAATTCGACGCTCTTTTCAGCTTC

Paste this into a BLAST search page for me
GCAGGTGCCGATTATTCTACGGGCTACGGGCTATTTTGTATCGCGAGTACGATTTCCCAGCAAATGTGCAGTCGAGAGCACTTGTTGGTCGTCAGTAGCCGTCAGTAGCCGTACAGCTGGATTTACAACCACCTTTACCACATAGACATTTACACACATCTAGCCGGTAAGCGTTAGCGTTTGTTTGGAATGCTCTCCACGCTCTCCACGTCTACTTACTTTTAAGCGGCCCGAAGCATCTAATTTTTTAGTTCTGCACTTGCTTAATTACCAGCCTGTAATTTTTCGATGAGGCCCAAAAAAGTGGCCACGTGGCACCCAGAATAGAATTCGACGCTCTTTTCAGCTTC

Full Affymetrix probeset data:

Annotations for 1636282_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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