FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636301_s_at:

>probe:Drosophila_2:1636301_s_at:721:437; Interrogation_Position=6186; Antisense; GATGTCCGACGAGACAATTCAATCG
>probe:Drosophila_2:1636301_s_at:129:409; Interrogation_Position=6193; Antisense; GACGAGACAATTCAATCGGCTGTTG
>probe:Drosophila_2:1636301_s_at:352:653; Interrogation_Position=6204; Antisense; TCAATCGGCTGTTGTGTAATTATAC
>probe:Drosophila_2:1636301_s_at:332:687; Interrogation_Position=6224; Antisense; TATACATATGTAGTTCTGCCACAAC
>probe:Drosophila_2:1636301_s_at:505:93; Interrogation_Position=6235; Antisense; AGTTCTGCCACAACTATTTTGTTTT
>probe:Drosophila_2:1636301_s_at:379:477; Interrogation_Position=6255; Antisense; GTTTTTCACATGAAGTGTTGACTTT
>probe:Drosophila_2:1636301_s_at:612:467; Interrogation_Position=6271; Antisense; GTTGACTTTAGTTTATGATAACACA
>probe:Drosophila_2:1636301_s_at:42:605; Interrogation_Position=6286; Antisense; TGATAACACACAACCAACCACACTT
>probe:Drosophila_2:1636301_s_at:465:201; Interrogation_Position=6301; Antisense; AACCACACTTGGATCACTGACTTTT
>probe:Drosophila_2:1636301_s_at:13:545; Interrogation_Position=6311; Antisense; GGATCACTGACTTTTATGTGCACTT
>probe:Drosophila_2:1636301_s_at:638:509; Interrogation_Position=6328; Antisense; GTGCACTTTAAGTTTGCAACTTTTA
>probe:Drosophila_2:1636301_s_at:719:659; Interrogation_Position=6370; Antisense; TAACTCTACGAATATGATACGATAC
>probe:Drosophila_2:1636301_s_at:437:457; Interrogation_Position=6385; Antisense; GATACGATACACACAGACCTACGAA
>probe:Drosophila_2:1636301_s_at:243:151; Interrogation_Position=6397; Antisense; ACAGACCTACGAAATGAACATAATG

Paste this into a BLAST search page for me
GATGTCCGACGAGACAATTCAATCGGACGAGACAATTCAATCGGCTGTTGTCAATCGGCTGTTGTGTAATTATACTATACATATGTAGTTCTGCCACAACAGTTCTGCCACAACTATTTTGTTTTGTTTTTCACATGAAGTGTTGACTTTGTTGACTTTAGTTTATGATAACACATGATAACACACAACCAACCACACTTAACCACACTTGGATCACTGACTTTTGGATCACTGACTTTTATGTGCACTTGTGCACTTTAAGTTTGCAACTTTTATAACTCTACGAATATGATACGATACGATACGATACACACAGACCTACGAAACAGACCTACGAAATGAACATAATG

Full Affymetrix probeset data:

Annotations for 1636301_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720