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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636302_s_at:

>probe:Drosophila_2:1636302_s_at:83:313; Interrogation_Position=2293; Antisense; GCAACTAAATGTTACGTTTTCGCCA
>probe:Drosophila_2:1636302_s_at:253:477; Interrogation_Position=2308; Antisense; GTTTTCGCCATAAGATTGCACTCTG
>probe:Drosophila_2:1636302_s_at:35:617; Interrogation_Position=2324; Antisense; TGCACTCTGATTGCTTCTAGTTCAA
>probe:Drosophila_2:1636302_s_at:387:91; Interrogation_Position=2342; Antisense; AGTTCAATTGTACAACGAGCCCCGG
>probe:Drosophila_2:1636302_s_at:141:417; Interrogation_Position=2358; Antisense; GAGCCCCGGCTTGCATGTTTTTAAC
>probe:Drosophila_2:1636302_s_at:205:365; Interrogation_Position=2393; Antisense; GAATTTATATTGATACGCTCCACTG
>probe:Drosophila_2:1636302_s_at:220:457; Interrogation_Position=2404; Antisense; GATACGCTCCACTGTAAATAGTTTA
>probe:Drosophila_2:1636302_s_at:100:161; Interrogation_Position=2418; Antisense; TAAATAGTTTACTCGACCGAATTCG
>probe:Drosophila_2:1636302_s_at:292:133; Interrogation_Position=2433; Antisense; ACCGAATTCGAATTGTTGACGAGCT
>probe:Drosophila_2:1636302_s_at:374:137; Interrogation_Position=2451; Antisense; ACGAGCTGAGTTTGGTGTACTGGCA
>probe:Drosophila_2:1636302_s_at:414:565; Interrogation_Position=2472; Antisense; GGCAAACTGTTTTAGCTGTTCAATT
>probe:Drosophila_2:1636302_s_at:537:285; Interrogation_Position=2487; Antisense; CTGTTCAATTGTTTATCGAGCATAC
>probe:Drosophila_2:1636302_s_at:329:511; Interrogation_Position=2581; Antisense; GTGAGAACTTGAAACACCGCAAACA
>probe:Drosophila_2:1636302_s_at:54:221; Interrogation_Position=2732; Antisense; AAGTGCGGACTAAGACAAATCGGAT

Paste this into a BLAST search page for me
GCAACTAAATGTTACGTTTTCGCCAGTTTTCGCCATAAGATTGCACTCTGTGCACTCTGATTGCTTCTAGTTCAAAGTTCAATTGTACAACGAGCCCCGGGAGCCCCGGCTTGCATGTTTTTAACGAATTTATATTGATACGCTCCACTGGATACGCTCCACTGTAAATAGTTTATAAATAGTTTACTCGACCGAATTCGACCGAATTCGAATTGTTGACGAGCTACGAGCTGAGTTTGGTGTACTGGCAGGCAAACTGTTTTAGCTGTTCAATTCTGTTCAATTGTTTATCGAGCATACGTGAGAACTTGAAACACCGCAAACAAAGTGCGGACTAAGACAAATCGGAT

Full Affymetrix probeset data:

Annotations for 1636302_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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