FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636345_s_at:

>probe:Drosophila_2:1636345_s_at:486:425; Interrogation_Position=3403; Antisense; GAGAGCCGAGCATTCCATTATTTAT
>probe:Drosophila_2:1636345_s_at:698:293; Interrogation_Position=3461; Antisense; CGAAGGATTAACAGTGAGCCATGAT
>probe:Drosophila_2:1636345_s_at:360:415; Interrogation_Position=3476; Antisense; GAGCCATGATTTTCTGATTTTTTCC
>probe:Drosophila_2:1636345_s_at:267:151; Interrogation_Position=3530; Antisense; ACATTAGATGTTTTTGTCCTGTAAA
>probe:Drosophila_2:1636345_s_at:364:677; Interrogation_Position=3594; Antisense; TAGGGATCTGTGTATCCCCTGTACA
>probe:Drosophila_2:1636345_s_at:103:491; Interrogation_Position=3614; Antisense; GTACACCCACTTACACAGTTGTAGT
>probe:Drosophila_2:1636345_s_at:688:467; Interrogation_Position=3631; Antisense; GTTGTAGTTATGTTCACTGAAGCAG
>probe:Drosophila_2:1636345_s_at:122:215; Interrogation_Position=3656; Antisense; AAGAGTTATGCGTAGGAGTACACAA
>probe:Drosophila_2:1636345_s_at:384:369; Interrogation_Position=3689; Antisense; GAATGCAAACTTACAAATCGAGAAA
>probe:Drosophila_2:1636345_s_at:538:661; Interrogation_Position=3752; Antisense; TAACAAAACGACGTGGACGCCAGGA
>probe:Drosophila_2:1636345_s_at:314:555; Interrogation_Position=3766; Antisense; GGACGCCAGGAAGAACAAGTTATGC
>probe:Drosophila_2:1636345_s_at:126:357; Interrogation_Position=3789; Antisense; GCAACTTATTACGAGTATTGTTCAA
>probe:Drosophila_2:1636345_s_at:165:667; Interrogation_Position=3846; Antisense; TACTGTAAATTATCTCAAGCCCAAA
>probe:Drosophila_2:1636345_s_at:372:237; Interrogation_Position=3971; Antisense; AATCGAAGCCTAACCACAACAGCAA

Paste this into a BLAST search page for me
GAGAGCCGAGCATTCCATTATTTATCGAAGGATTAACAGTGAGCCATGATGAGCCATGATTTTCTGATTTTTTCCACATTAGATGTTTTTGTCCTGTAAATAGGGATCTGTGTATCCCCTGTACAGTACACCCACTTACACAGTTGTAGTGTTGTAGTTATGTTCACTGAAGCAGAAGAGTTATGCGTAGGAGTACACAAGAATGCAAACTTACAAATCGAGAAATAACAAAACGACGTGGACGCCAGGAGGACGCCAGGAAGAACAAGTTATGCGCAACTTATTACGAGTATTGTTCAATACTGTAAATTATCTCAAGCCCAAAAATCGAAGCCTAACCACAACAGCAA

Full Affymetrix probeset data:

Annotations for 1636345_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720