FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636459_s_at:

>probe:Drosophila_2:1636459_s_at:493:15; Interrogation_Position=1030; Antisense; ATTTTGGAAGGTCACGCCTCGCAGG
>probe:Drosophila_2:1636459_s_at:381:527; Interrogation_Position=1053; Antisense; GGGAAGCTCCGCCAAGCAGATCTAT
>probe:Drosophila_2:1636459_s_at:651:247; Interrogation_Position=1088; Antisense; AATTGCAGGGCAATTCTGCTTTCCA
>probe:Drosophila_2:1636459_s_at:6:137; Interrogation_Position=1118; Antisense; ACGACTACGGGCTAATTCTGAATAA
>probe:Drosophila_2:1636459_s_at:311:95; Interrogation_Position=1142; Antisense; AGATACGCTACCAGTCGATCTTTCC
>probe:Drosophila_2:1636459_s_at:557:567; Interrogation_Position=1188; Antisense; GGCACTGGGCAAGGTGGCTCTTCAC
>probe:Drosophila_2:1636459_s_at:356:713; Interrogation_Position=1208; Antisense; TTCACCGCGGAGATGGCGACTGGTT
>probe:Drosophila_2:1636459_s_at:715:67; Interrogation_Position=1220; Antisense; ATGGCGACTGGTTGGGATCCGAATC
>probe:Drosophila_2:1636459_s_at:543:367; Interrogation_Position=1240; Antisense; GAATCGGATGTCCTTCGACTGGAGC
>probe:Drosophila_2:1636459_s_at:254:529; Interrogation_Position=1265; Antisense; GGGACCTGCCCAACTGCATAGAAAA
>probe:Drosophila_2:1636459_s_at:320:11; Interrogation_Position=1297; Antisense; ATTCGCTTCGAAGGATTCTCGCACT
>probe:Drosophila_2:1636459_s_at:370:331; Interrogation_Position=881; Antisense; GCGGCCACAAGATCTCCCTGAAAAA
>probe:Drosophila_2:1636459_s_at:63:725; Interrogation_Position=914; Antisense; TTGACATGTTCCGTAACCACATCTG
>probe:Drosophila_2:1636459_s_at:450:635; Interrogation_Position=957; Antisense; TCGCATCTGTGCCATCTTTGAATTT

Paste this into a BLAST search page for me
ATTTTGGAAGGTCACGCCTCGCAGGGGGAAGCTCCGCCAAGCAGATCTATAATTGCAGGGCAATTCTGCTTTCCAACGACTACGGGCTAATTCTGAATAAAGATACGCTACCAGTCGATCTTTCCGGCACTGGGCAAGGTGGCTCTTCACTTCACCGCGGAGATGGCGACTGGTTATGGCGACTGGTTGGGATCCGAATCGAATCGGATGTCCTTCGACTGGAGCGGGACCTGCCCAACTGCATAGAAAAATTCGCTTCGAAGGATTCTCGCACTGCGGCCACAAGATCTCCCTGAAAAATTGACATGTTCCGTAACCACATCTGTCGCATCTGTGCCATCTTTGAATTT

Full Affymetrix probeset data:

Annotations for 1636459_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720