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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636527_at:

>probe:Drosophila_2:1636527_at:385:51; Interrogation_Position=1766; Antisense; ATGCGCTTGTACTTTTTGTATCTTG
>probe:Drosophila_2:1636527_at:441:483; Interrogation_Position=1783; Antisense; GTATCTTGTATCTATCTATTCGTAT
>probe:Drosophila_2:1636527_at:528:11; Interrogation_Position=1800; Antisense; ATTCGTATCTTGTAGTCTGTGTGCT
>probe:Drosophila_2:1636527_at:596:499; Interrogation_Position=1814; Antisense; GTCTGTGTGCTGTGTGAGTACTTAA
>probe:Drosophila_2:1636527_at:308:177; Interrogation_Position=1856; Antisense; AAACGGACGCTGTGACGCGCTTCAA
>probe:Drosophila_2:1636527_at:453:323; Interrogation_Position=1872; Antisense; GCGCTTCAATTTGGGTTCCTCTCAA
>probe:Drosophila_2:1636527_at:302:719; Interrogation_Position=1887; Antisense; TTCCTCTCAACTTCCAGCTGAATGG
>probe:Drosophila_2:1636527_at:649:265; Interrogation_Position=2144; Antisense; CAGATTTTTCGCCTGCGTTTGTATT
>probe:Drosophila_2:1636527_at:283:327; Interrogation_Position=2158; Antisense; GCGTTTGTATTTGCCATCCTTTTAG
>probe:Drosophila_2:1636527_at:717:43; Interrogation_Position=2173; Antisense; ATCCTTTTAGTTTCGGCACGCGATT
>probe:Drosophila_2:1636527_at:281:361; Interrogation_Position=2204; Antisense; GAATCCTTTTTTGTATTGGGCTGTG
>probe:Drosophila_2:1636527_at:162:521; Interrogation_Position=2221; Antisense; GGGCTGTGGCCTATCGTTTGTGTTT
>probe:Drosophila_2:1636527_at:626:643; Interrogation_Position=2246; Antisense; TCATTTACTTTGTTTTTCCGCGCTT
>probe:Drosophila_2:1636527_at:63:717; Interrogation_Position=2261; Antisense; TTCCGCGCTTACGATTTAGTTATTA

Paste this into a BLAST search page for me
ATGCGCTTGTACTTTTTGTATCTTGGTATCTTGTATCTATCTATTCGTATATTCGTATCTTGTAGTCTGTGTGCTGTCTGTGTGCTGTGTGAGTACTTAAAAACGGACGCTGTGACGCGCTTCAAGCGCTTCAATTTGGGTTCCTCTCAATTCCTCTCAACTTCCAGCTGAATGGCAGATTTTTCGCCTGCGTTTGTATTGCGTTTGTATTTGCCATCCTTTTAGATCCTTTTAGTTTCGGCACGCGATTGAATCCTTTTTTGTATTGGGCTGTGGGGCTGTGGCCTATCGTTTGTGTTTTCATTTACTTTGTTTTTCCGCGCTTTTCCGCGCTTACGATTTAGTTATTA

Full Affymetrix probeset data:

Annotations for 1636527_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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