FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636534_a_at:

>probe:Drosophila_2:1636534_a_at:186:465; Interrogation_Position=1154; Antisense; GATTGTCCCCTGTACGTGGTCCACG
>probe:Drosophila_2:1636534_a_at:570:139; Interrogation_Position=1167; Antisense; ACGTGGTCCACGTGATGAGCAAGTC
>probe:Drosophila_2:1636534_a_at:55:591; Interrogation_Position=1170; Antisense; TGGTCCACGTGATGAGCAAGTCGGC
>probe:Drosophila_2:1636534_a_at:145:219; Interrogation_Position=1187; Antisense; AAGTCGGCGGGCATTGAGCTGGCCA
>probe:Drosophila_2:1636534_a_at:321:5; Interrogation_Position=1199; Antisense; ATTGAGCTGGCCAGGGCACGCCACC
>probe:Drosophila_2:1636534_a_at:117:277; Interrogation_Position=1225; Antisense; CTACCGCGGGCGATACATAATGGGC
>probe:Drosophila_2:1636534_a_at:239:575; Interrogation_Position=1233; Antisense; GGCGATACATAATGGGCGAGACCCT
>probe:Drosophila_2:1636534_a_at:465:125; Interrogation_Position=1239; Antisense; ACATAATGGGCGAGACCCTGGCCGC
>probe:Drosophila_2:1636534_a_at:333:355; Interrogation_Position=1272; Antisense; GCACGGATGCCACCTGTTGCCAGCA
>probe:Drosophila_2:1636534_a_at:568:603; Interrogation_Position=1286; Antisense; TGTTGCCAGCACTTGGGCTTCGACG
>probe:Drosophila_2:1636534_a_at:150:113; Interrogation_Position=1293; Antisense; AGCACTTGGGCTTCGACGCCGAGGC
>probe:Drosophila_2:1636534_a_at:343:411; Interrogation_Position=1307; Antisense; GACGCCGAGGCTGCGCATGTGCTCA
>probe:Drosophila_2:1636534_a_at:258:303; Interrogation_Position=1360; Antisense; CCCCGAGTTCTTGATGAAGCTGCTG
>probe:Drosophila_2:1636534_a_at:319:429; Interrogation_Position=1364; Antisense; GAGTTCTTGATGAAGCTGCTGGCGA

Paste this into a BLAST search page for me
GATTGTCCCCTGTACGTGGTCCACGACGTGGTCCACGTGATGAGCAAGTCTGGTCCACGTGATGAGCAAGTCGGCAAGTCGGCGGGCATTGAGCTGGCCAATTGAGCTGGCCAGGGCACGCCACCCTACCGCGGGCGATACATAATGGGCGGCGATACATAATGGGCGAGACCCTACATAATGGGCGAGACCCTGGCCGCGCACGGATGCCACCTGTTGCCAGCATGTTGCCAGCACTTGGGCTTCGACGAGCACTTGGGCTTCGACGCCGAGGCGACGCCGAGGCTGCGCATGTGCTCACCCCGAGTTCTTGATGAAGCTGCTGGAGTTCTTGATGAAGCTGCTGGCGA

Full Affymetrix probeset data:

Annotations for 1636534_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720