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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636558_a_at:

>probe:Drosophila_2:1636558_a_at:47:549; Interrogation_Position=1365; Antisense; GGAGTTTCACTTCAACCACTACTTA
>probe:Drosophila_2:1636558_a_at:10:3; Interrogation_Position=1379; Antisense; ACCACTACTTAACTCGGCGAAGGCG
>probe:Drosophila_2:1636558_a_at:458:371; Interrogation_Position=1397; Antisense; GAAGGCGCATCGAGATCGCACATGC
>probe:Drosophila_2:1636558_a_at:267:283; Interrogation_Position=1425; Antisense; CTGCCTGACCGAGCGACAGATCAAG
>probe:Drosophila_2:1636558_a_at:153:371; Interrogation_Position=1482; Antisense; GAAGGAGTTACGAGCCGTCAAGGAA
>probe:Drosophila_2:1636558_a_at:355:241; Interrogation_Position=1506; Antisense; AATAAATGAACAGGCGCGACGCGAT
>probe:Drosophila_2:1636558_a_at:215:425; Interrogation_Position=1561; Antisense; GAGACGATGAAATCCGCCCAGCAGA
>probe:Drosophila_2:1636558_a_at:26:237; Interrogation_Position=1571; Antisense; AATCCGCCCAGCAGAACAAGCAAGT
>probe:Drosophila_2:1636558_a_at:151:151; Interrogation_Position=1709; Antisense; ACTTGCACCACTCGGTGGTAGGTCA
>probe:Drosophila_2:1636558_a_at:192:537; Interrogation_Position=1725; Antisense; GGTAGGTCAAAACGATCTCAAGCTC
>probe:Drosophila_2:1636558_a_at:90:653; Interrogation_Position=1742; Antisense; TCAAGCTCGGCCTTGGCATGGGCGT
>probe:Drosophila_2:1636558_a_at:201:595; Interrogation_Position=1823; Antisense; TGGGCATGATGAGCGCCCTGGACAA
>probe:Drosophila_2:1636558_a_at:16:363; Interrogation_Position=1850; Antisense; GCAATCACGACCTGCTAAAGGCGGT
>probe:Drosophila_2:1636558_a_at:446:89; Interrogation_Position=1881; Antisense; AGTCAACTCCTAAGCTGACAACCAC

Paste this into a BLAST search page for me
GGAGTTTCACTTCAACCACTACTTAACCACTACTTAACTCGGCGAAGGCGGAAGGCGCATCGAGATCGCACATGCCTGCCTGACCGAGCGACAGATCAAGGAAGGAGTTACGAGCCGTCAAGGAAAATAAATGAACAGGCGCGACGCGATGAGACGATGAAATCCGCCCAGCAGAAATCCGCCCAGCAGAACAAGCAAGTACTTGCACCACTCGGTGGTAGGTCAGGTAGGTCAAAACGATCTCAAGCTCTCAAGCTCGGCCTTGGCATGGGCGTTGGGCATGATGAGCGCCCTGGACAAGCAATCACGACCTGCTAAAGGCGGTAGTCAACTCCTAAGCTGACAACCAC

Full Affymetrix probeset data:

Annotations for 1636558_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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