FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636579_s_at:

>probe:Drosophila_2:1636579_s_at:647:679; Interrogation_Position=1507; Antisense; TAGGTGGTGCGTGCGTCATCTCTAC
>probe:Drosophila_2:1636579_s_at:583:529; Interrogation_Position=1549; Antisense; GGGATATTCCTCAAGACAGGCCTCT
>probe:Drosophila_2:1636579_s_at:86:71; Interrogation_Position=1566; Antisense; AGGCCTCTACTATTGTCTTTCTTTT
>probe:Drosophila_2:1636579_s_at:192:647; Interrogation_Position=1590; Antisense; TCAGTGCCGTCTTCCATGAATATTT
>probe:Drosophila_2:1636579_s_at:227:21; Interrogation_Position=1609; Antisense; ATATTTGGTTTCAGTTCCTTTGCAA
>probe:Drosophila_2:1636579_s_at:422:27; Interrogation_Position=1661; Antisense; ATGATGGGTCAGATTCCCCTATCGG
>probe:Drosophila_2:1636579_s_at:308:685; Interrogation_Position=1680; Antisense; TATCGGCCATATCCAAATCCATTGA
>probe:Drosophila_2:1636579_s_at:442:143; Interrogation_Position=1711; Antisense; ACTGGGTCCCCGAATGGGCAATATA
>probe:Drosophila_2:1636579_s_at:463:565; Interrogation_Position=1727; Antisense; GGCAATATAATCGTGTGGGCTTCCA
>probe:Drosophila_2:1636579_s_at:277:595; Interrogation_Position=1742; Antisense; TGGGCTTCCATTATTCTTGGTCAGC
>probe:Drosophila_2:1636579_s_at:38:497; Interrogation_Position=1761; Antisense; GTCAGCCTCTGTGCATAATGGCCTA
>probe:Drosophila_2:1636579_s_at:537:345; Interrogation_Position=1807; Antisense; GCATTTCAAAAACTCGCTCAACGGC
>probe:Drosophila_2:1636579_s_at:657:649; Interrogation_Position=1824; Antisense; TCAACGGCACCGACTACAGTAGTTA
>probe:Drosophila_2:1636579_s_at:377:611; Interrogation_Position=1888; Antisense; TGAAATATCTGCATCGGTCGGGTCC

Paste this into a BLAST search page for me
TAGGTGGTGCGTGCGTCATCTCTACGGGATATTCCTCAAGACAGGCCTCTAGGCCTCTACTATTGTCTTTCTTTTTCAGTGCCGTCTTCCATGAATATTTATATTTGGTTTCAGTTCCTTTGCAAATGATGGGTCAGATTCCCCTATCGGTATCGGCCATATCCAAATCCATTGAACTGGGTCCCCGAATGGGCAATATAGGCAATATAATCGTGTGGGCTTCCATGGGCTTCCATTATTCTTGGTCAGCGTCAGCCTCTGTGCATAATGGCCTAGCATTTCAAAAACTCGCTCAACGGCTCAACGGCACCGACTACAGTAGTTATGAAATATCTGCATCGGTCGGGTCC

Full Affymetrix probeset data:

Annotations for 1636579_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720