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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636626_s_at:

>probe:Drosophila_2:1636626_s_at:723:233; Interrogation_Position=1003; Antisense; AATGCCTGTTGGAGCTACACGCCAG
>probe:Drosophila_2:1636626_s_at:682:585; Interrogation_Position=1030; Antisense; TGGAGCTACGCGATTCAGATGGACA
>probe:Drosophila_2:1636626_s_at:328:105; Interrogation_Position=1054; Antisense; AGACTTGTTACGACGTGGCTGACGA
>probe:Drosophila_2:1636626_s_at:80:265; Interrogation_Position=1083; Antisense; CAGATCTGCCAGGTGCTTCAAACGG
>probe:Drosophila_2:1636626_s_at:713:557; Interrogation_Position=1106; Antisense; GGAACGGGAACGACTCGCTGGATCC
>probe:Drosophila_2:1636626_s_at:317:545; Interrogation_Position=1125; Antisense; GGATCCGCGTCCTAATGTCAAAATC
>probe:Drosophila_2:1636626_s_at:457:467; Interrogation_Position=1154; Antisense; GTTGTTCGGTGCTCATTTGCTTTAA
>probe:Drosophila_2:1636626_s_at:247:397; Interrogation_Position=1214; Antisense; GACAAGTCCCCTGTAAGTTCTTTGG
>probe:Drosophila_2:1636626_s_at:61:537; Interrogation_Position=707; Antisense; GGTCGTTCATTCCATTGAGTCGGTC
>probe:Drosophila_2:1636626_s_at:271:387; Interrogation_Position=759; Antisense; GAAAAGACCCTGTTTGACCACGTGA
>probe:Drosophila_2:1636626_s_at:86:195; Interrogation_Position=811; Antisense; AACTGCTGCAGCCAAGTGACTTGGT
>probe:Drosophila_2:1636626_s_at:78:673; Interrogation_Position=875; Antisense; TACCGATCGCAATGCCGTCGAAATC
>probe:Drosophila_2:1636626_s_at:274:395; Interrogation_Position=894; Antisense; GAAATCATACAGTTCCTGGTGCGGA
>probe:Drosophila_2:1636626_s_at:454:95; Interrogation_Position=978; Antisense; AGTTGTGGACACTTGGAGGCGCTCC

Paste this into a BLAST search page for me
AATGCCTGTTGGAGCTACACGCCAGTGGAGCTACGCGATTCAGATGGACAAGACTTGTTACGACGTGGCTGACGACAGATCTGCCAGGTGCTTCAAACGGGGAACGGGAACGACTCGCTGGATCCGGATCCGCGTCCTAATGTCAAAATCGTTGTTCGGTGCTCATTTGCTTTAAGACAAGTCCCCTGTAAGTTCTTTGGGGTCGTTCATTCCATTGAGTCGGTCGAAAAGACCCTGTTTGACCACGTGAAACTGCTGCAGCCAAGTGACTTGGTTACCGATCGCAATGCCGTCGAAATCGAAATCATACAGTTCCTGGTGCGGAAGTTGTGGACACTTGGAGGCGCTCC

Full Affymetrix probeset data:

Annotations for 1636626_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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