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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636673_s_at:

>probe:Drosophila_2:1636673_s_at:579:153; Interrogation_Position=3660; Antisense; ACAGTAACAACAGAGCAGTCGCAGC
>probe:Drosophila_2:1636673_s_at:82:503; Interrogation_Position=3677; Antisense; GTCGCAGCAGACCACAAAATATTGT
>probe:Drosophila_2:1636673_s_at:452:465; Interrogation_Position=3700; Antisense; GTTGTTAATGCGAAACGATCTCCAA
>probe:Drosophila_2:1636673_s_at:656:89; Interrogation_Position=3745; Antisense; AGTAGACAACAAGTAATTCCTCAGT
>probe:Drosophila_2:1636673_s_at:377:7; Interrogation_Position=3760; Antisense; ATTCCTCAGTCAAGTAAAACGTTCA
>probe:Drosophila_2:1636673_s_at:469:197; Interrogation_Position=3777; Antisense; AACGTTCAAATTTGTTGCAATTCGA
>probe:Drosophila_2:1636673_s_at:7:337; Interrogation_Position=3904; Antisense; GCTGCGTACGCTAACTTATTAAATA
>probe:Drosophila_2:1636673_s_at:224:275; Interrogation_Position=3944; Antisense; CTTTATTTAGTGGTAGCTAGTGCAA
>probe:Drosophila_2:1636673_s_at:462:249; Interrogation_Position=3966; Antisense; CAATTTAGTTAGTAAGCCGCCGTCT
>probe:Drosophila_2:1636673_s_at:298:179; Interrogation_Position=3994; Antisense; AAACACCGACTAACCAATATCGCAA
>probe:Drosophila_2:1636673_s_at:152:687; Interrogation_Position=4022; Antisense; TATATTTCCACCCAATCGAACCAAT
>probe:Drosophila_2:1636673_s_at:6:381; Interrogation_Position=4039; Antisense; GAACCAATCTTCCAAACATCTCTTT
>probe:Drosophila_2:1636673_s_at:283:255; Interrogation_Position=4051; Antisense; CAAACATCTCTTTTGGCGTTAATTT
>probe:Drosophila_2:1636673_s_at:477:653; Interrogation_Position=4083; Antisense; TCAATCAAACAGGTCATGCATATTT

Paste this into a BLAST search page for me
ACAGTAACAACAGAGCAGTCGCAGCGTCGCAGCAGACCACAAAATATTGTGTTGTTAATGCGAAACGATCTCCAAAGTAGACAACAAGTAATTCCTCAGTATTCCTCAGTCAAGTAAAACGTTCAAACGTTCAAATTTGTTGCAATTCGAGCTGCGTACGCTAACTTATTAAATACTTTATTTAGTGGTAGCTAGTGCAACAATTTAGTTAGTAAGCCGCCGTCTAAACACCGACTAACCAATATCGCAATATATTTCCACCCAATCGAACCAATGAACCAATCTTCCAAACATCTCTTTCAAACATCTCTTTTGGCGTTAATTTTCAATCAAACAGGTCATGCATATTT

Full Affymetrix probeset data:

Annotations for 1636673_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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