FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1636791_s_at:

>probe:Drosophila_2:1636791_s_at:10:179; Interrogation_Position=2717; Antisense; AAACTGATCAATATGCTGTGGCACA
>probe:Drosophila_2:1636791_s_at:716:333; Interrogation_Position=2731; Antisense; GCTGTGGCACACTAAGGCGTATATG
>probe:Drosophila_2:1636791_s_at:309:483; Interrogation_Position=2749; Antisense; GTATATGCACGCCAATCGGAATAAG
>probe:Drosophila_2:1636791_s_at:273:413; Interrogation_Position=2821; Antisense; GACCGCATTTGCTGTAGAGATCTCT
>probe:Drosophila_2:1636791_s_at:581:427; Interrogation_Position=2837; Antisense; GAGATCTCTCATTCGAGGGATCCTT
>probe:Drosophila_2:1636791_s_at:257:449; Interrogation_Position=2855; Antisense; GATCCTTTCGATTCATGTCCGTGTA
>probe:Drosophila_2:1636791_s_at:22:61; Interrogation_Position=2869; Antisense; ATGTCCGTGTACTTTAGACTCGTTT
>probe:Drosophila_2:1636791_s_at:561:607; Interrogation_Position=2925; Antisense; TGAGGTCTAAATCAGCTCACTCGCT
>probe:Drosophila_2:1636791_s_at:490:719; Interrogation_Position=2955; Antisense; TTCCACTCTCAATAGCACCGATATC
>probe:Drosophila_2:1636791_s_at:161:245; Interrogation_Position=3024; Antisense; AATTTTTCCAATTCCGAGGCTTCAT
>probe:Drosophila_2:1636791_s_at:380:439; Interrogation_Position=3039; Antisense; GAGGCTTCATCTCCAGGATTAGCAA
>probe:Drosophila_2:1636791_s_at:278:435; Interrogation_Position=3101; Antisense; GAGGGTACCATATCAGCACATTAAT
>probe:Drosophila_2:1636791_s_at:94:485; Interrogation_Position=3174; Antisense; GTACGTAACCCTCCAATTGAGTCGT
>probe:Drosophila_2:1636791_s_at:293:181; Interrogation_Position=3209; Antisense; AAAACATTCCGTGCCTCTGTTAGAA

Paste this into a BLAST search page for me
AAACTGATCAATATGCTGTGGCACAGCTGTGGCACACTAAGGCGTATATGGTATATGCACGCCAATCGGAATAAGGACCGCATTTGCTGTAGAGATCTCTGAGATCTCTCATTCGAGGGATCCTTGATCCTTTCGATTCATGTCCGTGTAATGTCCGTGTACTTTAGACTCGTTTTGAGGTCTAAATCAGCTCACTCGCTTTCCACTCTCAATAGCACCGATATCAATTTTTCCAATTCCGAGGCTTCATGAGGCTTCATCTCCAGGATTAGCAAGAGGGTACCATATCAGCACATTAATGTACGTAACCCTCCAATTGAGTCGTAAAACATTCCGTGCCTCTGTTAGAA

Full Affymetrix probeset data:

Annotations for 1636791_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720